Modern Islamic civilization in the analysis of Islamic scholars is experiencing theological discrepancy between the ideal of Islamic normative teachings and the actual phenomenon of the people. Theological discrepancy between teaching ideals normative Islam with the actual phenomenon of the people, becomes the character of Modern Islam civilization. The ideal of normative teachings of Islam is to realize that Islam is the religion rahmatan lii natural or beneficial for all nature as well with his people, while the actual phenomenon of the people describe a miniature neo-jahiliyah framed multi-dimensional crises that began with crises intellectual by not wanting to get around scientific progress and development technology, followed by methodological crises that are always late in learning and access information in a fast-paced century and then the economic crisis, crisis social (increasingly alienated, marginalized and uncritical) and ends with a crisis morals are increasingly hedonistic and leave traditional bases primarily religion. The malaise of the people was extended by Western occupation of the socio-political and psychological areas of the people by destroying worldviews people on the level of ontological, epistemological and axiological through westernization his science which is subjectivism-anthropocentric, dualism, mechanistic-deterministic, atomistic-reductionism, instrumentalism, materialism-scientism. Because the worldview of a people is the foundation in building and determine the direction of the development of its civilization in which world-views are built by the epistemology, the above phenomenon is something that must be paid for expensive for Muslims. Through interdisciplinary studies, the future reconstruction of civilization Islam requires the reconstruction of a paradigm of science and a system education by neutralizing both. Naturalization and acculturation paradigm of science and education system with religious values and Islamic culture will produce theistic science and holistic education systems. This is a strategic step for the reconstruction of modern Islamic civilization because, the linkage of science and values is a philosophical element in futuristic studies for those who try to answer future problems.
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