Self-assembly is a process in which individual components form an organized structure as a consequence of local interactions. When using magnetics to create interaction forces, the magnetic flux distribution of a self-assembling system changes as its assembly state varies. Since Hall effect sensors are a convenient and effective means to detect changes in the magnetic field, we explore their applicability to monitoring the morphology of such magnetically self-assembling systems. We find that optimal positions for the sensor can be found where the flux changes maximally. Our analysis is applied to two different systems by deriving the flux changes for all possible states, and theoretical flux changes are verified with experiments. In addition, we show that a small number of sensors is sufficient for robust state determination. In addition to state detection, experiments show the potential for angle measurement for compliant cylindrical magnet joints using a single Hall sensor. This work was supported by the European Commission in the framework of the 6FP NEST Adventure Project ARES, and by the Swiss National Science Foundation (project #200021-105634/1 and NCCR Co-Me).
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