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Design of ribonuclease T1 mutants with tryptophan-59 in noncrystallographic conformations

机译:无晶构象中色氨酸-59的核糖核酸酶T1突变体的设计

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Minimum perturbation mapping reveals that five side chain conformations of tryptophan-59 can potentially pack in the hydrophobic core of ribonuclease T1. In the crystallographic structure tryptophan-59 is in the tram perpendicular conformation. The other four wells in the tryptophan-59 x{sup}1×x{sup}2 torsion space minimum perturbation mapping are trans antiperpendicular, gauche{sup}+ antiperpendicular, gauche{sup}+ perpendicular, and gauche{sup}- perpendicular. The point mutations V33I and V33L are predicted to stabilize the tram antiperpendicular over the perpendicular conformation by 1.3 and 0.6 kcal/mol, respectively. The three gauche conformations require the creation of a new pocket within the protein core. The Mutation F80G creates the pocket for the gauche{sup}+ antiperpendicular tryptophan-59 conformation. The additional mutation V78A makes a more generous pocket for this conformation. The three mutations A19G, V78G and F80L create the pocket for the gauche{sup}+ perpendicular conformation. A slightly more generous mutation at residue 80 may be required to fully stabilize this conformation. It does not appear possible to create a pocket that fits the gauche{sup}- perpendicular conformation better than the other two gauche conformations. The expression of ribonuclease-T1 mutants with tryptophan-59 in a gauche conformation probably requires filling in the crystallographic tryptophan-59 pocket. The mutations A22F, V33F, or V67F are all promising possibilities for this purpose.
机译:最小扰动映射显示色氨酸-59的五个侧链构象可以潜在地包装核糖核酸酶T1的疏水核心。在晶体结构中,色氨酸-59是在电车垂直构象中。色氨酸-59 x {sup} 1×x {sup} 2扭转空间最小扰动映射的其他四个孔是跨反盆子,Gauche {sup} +垂直,Gauche {sup} - 垂直于垂直,{sup}&perpendular 。预测点突变V33I和V331分别稳定电臂对垂直构象的垂直构象,分别为1.3和0.6kcal / mol。三个Gauche构象需要在蛋白质核心内部创建一个新的口袋。突变F80G为Gauche {sup} +止回性色谱 - 59构象产生口袋。额外的突变V78a为此构象制造更慷慨的袋。三个突变A19G,V78G和F80L为Gauche {sup} +垂直构象产生口袋。残留物80的稍大突变可能需要完全稳定这种构象。它似乎并不是可以创建一个适合Gauche {sup} - 垂直构象的口袋比其他两个gauche构象更好。 Ribonuclease-T1突变体在Gauche构造中的色氨酸-59的表达可能需要填充晶体色氨酸-59口袋。突变A22F,V33F或V67F对于此目的是所有有前途的可能性。

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