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A Hybrid Deep Learning Approach for Spatial Trigger Extraction from Radiology Reports

机译:放射学报告的空间触发提取的混合深度学习方法

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Radiology reports contain important clinical information about patients which are often tied through spatial expressions. Spatial expressions (or triggers) are mainly used to describe the positioning of radiographic findings or medical devices with respect to some anatomical structures. As the expressions result from the mental visualization of the radiologist's interpretations, they are varied and complex. The focus of this work is to automatically identify the spatial expression terms from three different radiology sub-domains. We propose a hybrid deep learning-based NLP method that includes - 1) generating a set of candidate spatial triggers by exact match with the known trigger terms from the training data, 2) applying domain-specific constraints to filter the candidate triggers, and 3) utilizing a BERT-based classifier to predict whether a candidate trigger is a true spatial trigger or not. The results are promising, with an improvement of 24 points in the average F1 measure compared to a standard BERT-based sequence labeler.
机译:放射学报告包含有关经常通过空间表达捆绑的患者的重要临床信息。空间表达式(或触发器)主要用于描述射线照相发现或医疗设备相对于一些解剖结构的定位。由于表达来自放射科医师解释的心理可视化,因此它们是多种多样的并且复杂。这项工作的重点是自动识别来自三个不同放射学子域的空间表达式。我们提出了一种混合深度学习的NLP方法,包括 - 1)通过与来自训练数据的已知触发术语精确匹配来生成一组候选空间触发,2)应用域特定约束来过滤候选触发器,以及3 )利用基于BERT的分类器来预测候选触发器是否是真正的空间触发器。结果具有很有希望的是,与标准伯特的序列贴标器相比,平均F1测量中的平均F1测量中的24分。

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