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Robust Self-assembly of Graphs

机译:强大的图形自我组装

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Self-assembly is a process in which small building blocks interact autonomously to form larger structures. A recently studied model of self-assembly is the Accretive Graph Assembly Model whereby an edge-weighted graph is assembled one vertex at a time starting from a designated seed vertex. The weight of an edge specifies the magnitude of attraction (positive weight) or repulsion (negative weight) between adjacent vertices. It is feasible to add a vertex to the assembly if the total attraction minus repulsion of the already built neighbors exceeds a certain threshold, called the assembly temperature. This model naturally generalizes the extensively studied Tile Assembly Model. A natural question in graph self-assembly is to determine whether or not there exists a sequence of feasible vertex additions to realize the entire graph. However, even when it is feasible to realize the assembly, not much can be inferred about its likelihood of realization in practice due to the uncontrolled nature of the self-assembly process. Motivated by this, we introduce the robust self-assembly problem where the goal is to determine if every possible sequence of feasible vertex additions leads to the completion of the assembly. We show that the robust self-assembly problem is co-NP-complete even on planar graphs with two distinct edge weights. We then examine the tractability of the robust self-assembly problem on a natural subclass of planar graphs, namely grid graphs. We identify structural conditions that determine whether or not a grid graph can be robustly self-assembled, and give poly-time algorithms to determine this for several interesting cases of the problem. Finally, we also show that the problem of counting the number of feasible orderings that lead to the completion of an assembly is #P-complete.
机译:自组装是一个过程,其中小积木相互作用自发地形成更大的结构。的自组装甲最近研究的模型是增生格拉夫装配模型,由此边缘加权图在时间组装一个顶点从指定的种子顶点开始。的边的权重指定的吸引力(正权重)或相邻的顶点之间的排斥(负重量)的大小。这是可行的,如果已建成的邻居的总吸引减去斥力超过某个阈值,称为该组件温度的顶点添加到组件。这种模式自然概括了广泛的研究瓦片组件模型。图中自组装一个自然的问题是确定是否存在可行顶点添加的序列,以实现整个曲线图。然而,即使是实现装配可行的,没有多少可以推断关于它的实现在实践中可能由于自组装过程不受控制的性质。这个启发,我们引入了强大的自组装的问题,其目的是确定是否可行顶点增加引线的每一个可能的序列组装完成。我们表明,强大的自组装的问题是共同的NP完全甚至用两个不同的边权平面图。然后,我们检查了强大的自组装问题的易处理性的平面图,即网格图的自然子类。我们确定确定网格图是否能稳健地自组装,并给多时间的算法来确定此为问题的一些有趣的案例结构性条件。最后,我们还显示,计数可行排序的数量导致的组装完成为#P-完整的问题。

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