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A Deep Learning-Enabled Iterative Reconstruction of Ultra-Low-Dose CT: Use of Synthetic Sinogram-based Noise Simulation Technique

机译:超低剂量CT的基于深度学习的迭代重建:基于合成汉字的噪声仿真技术的使用

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Effective elimination of unique CT noise pattern while preserving adequate image quality is crucial in reducing radiation dose to ultra-low-dose level in CT imaging practice. In this study, we present a novel Deep Learning-enable Iterative Reconstruction (Deep IR) approach for CT denoising which incorporate a synthetic sinogram-based noise simulation technique for training of Convolutional Neural Network (CNN). Regular dose CT images from 25 patients were used from Seoul National University Hospital. The CT scans were performed at 140 kVp, 100 mAs, and reconstructed with standard FBP technique using B60f kernel. Among them, 20 patients were randomly selected as a training set and the rest 5 patients were used for a test set. We applied a re-projection technique to create a synthetic sinogram from the DICOM CT image, and then a simulated noise sinogram was generated to match the noise level of 10mAs according to Poisson statistic and the system noise model of the given scanner (Somatom Sensation 16, Siemens). We added the simulated noise sinogram to the re-projected synthetic sinogram to generate a simulated sinogram of ultra-low dose scan. We also created the simulated ultra-low-dose CT image by applying FBP reconstruction of the simulated noise sinogram with B60f kernel. A CNN model was created using a TensorFlow framework to have 10 consecutive convolution layer and activation layer. The CNN was trained to learn the noise in sinogram domain: the simulated noisy sinogram of ultra-low dose scan was fed into its input nodes with the output node being fed by the simulated noise sinogram. At test phase, the noise sinogram from the CNN output was reconstructed with using B60f kernel to create a noise CT image, which in turn was subtracted from the simulated ultra-low-dose CT image to produce a Deep IR CT image. The performance was evaluated quantitatively in terms of structural similarity (SSIM) index, peak signal-to-noise ratio (PSNR) and noise level measurement and qualitatively in CT image by comparing the noise pattern and image quality. Compared to low-dose image, denoising image of the SSIM and the PSNR were improved from 0.75 to 0.80, 28.61db to 32.16 respectively. The noise level of denoising image was reduced to an average of 56 % of that of low-dose image. The noise pattern in reconstructed noise CT was indistinguishable from that of real CT images, and the image quality of Deep IR CT image was overall much higher than that of simulated ultra-low-dose CT.
机译:有效地消除独特的CT噪声模式,同时保持足够的图像质量在降低CT成像实践中降低辐射剂量至超低剂量水平至关重要。在这项研究中,我们提出了一种新的深度学习 - 能够进行CT去噪的迭代重建(深IR)方法,该方法包括用于卷积神经网络(CNN)的培训基于合成的Sinogram的噪声仿真技术。来自25名患者的常规剂量CT图像被从首尔国立大学医院使用。 CT扫描在140kVP,100MAS,并使用B60F内核重建标准FBP技术。其中,将20名患者随机选择作为训练集,其余5名患者用于测试集。我们应用了一种重新投影技术来从DICOM CT图像创建合成的SINOGRAM,然后产生模拟噪声SINOGRAM以与给定扫描仪的泊松统计和系统噪声模型相匹配10MAS的噪声水平(SOMATOM SENSATION 16 , 西门子)。我们将模拟的噪声铭顶添加到重新投影的合成铭顶,以产生模拟的超低剂量扫描的模拟图。我们还通过使用B60F内核应用模拟噪声描述的FBP重建来创建模拟的超低剂量CT图像。使用TensoRFlow框架创建CNN模型,以具有10个连续的卷积层和激活层。 CNN培训,以学习铭顶域域中的噪声:用模拟的噪声SINOGRAME馈送输出节点,将超低剂量扫描的模拟嘈杂的SINOGLAG送入其输入节点。在测试阶段,使用B60F内核重建来自CNN输出的噪声SinoGram,以创建噪声CT图像,该噪声CT图像从模拟的超低剂量CT图像中减去以产生深IR CT图像。通过比较噪声模式和图像质量,在结构相似性(SSIM)指数,峰值信噪比(PSNR)和噪声水平测量和定性中定性地评估性能。与低剂量图像相比,SSIM的去噪图像和PSNR分别从0.75升至0.8.61dB至32.16。去噪图像的噪声水平降低到低剂量图像的56%的平均值。重建噪声CT中的噪声模式与真实CT图像的噪声模式难以区分,并且深度IR CT图像的图像质量总体远高于模拟超低剂量CT的图像质量。

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