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Enumerating Minimal Tropical Connected Sets

机译:列举最小的热带关联集

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摘要

Enumerating objects of a specified type is one of the principal tasks in algorithmics. In graph algorithms one often enumerates vertex subsets satisfying a certain property. The optimization problem Tropical Connected Set is strongly related to the Graph Motif problem which deals with vertex-colored graphs and has various applications in metabolic networks and biology. A tropical connected set of a vertex-colored graph is a subset of the vertices which induces a connected subgraph in which all colors of the input graph appear at least once; among others this generalizes steiner trees. We investigate the enumeration of the inclusion-minimal tropical connected sets of a given vertex-colored graph. We present algorithms to enumerate all minimal tropical connected sets on colored graphs of the following graph classes: on split graphs in running in time O~*(1.6402~n), on interval graphs in O~*(1.8613~n) time, on cobipartite graphs and block graphs in O~*(3~(n/3)). Our algorithms imply corresponding upper bounds on the number of minimal tropical connected sets in graphs on n vertices for each of these graph classes. We also provide various new lower bound constructions thereby obtaining matching lower bounds for cobipartite and block graphs.
机译:枚举指定类型的对象是算法学的主要任务之一。在图算法中,人们经常枚举满足某种特性的顶点子集。热带连通集的优化问题与图主题有关,图主题涉及顶点彩色图,在代谢网络和生物学中具有多种应用。顶点彩色图的热带连接集是顶点的子集,这些子集会诱发一个连接子图,其中输入图的所有颜色至少出现一次;除其他外,这使斯坦纳树泛化。我们调查了给定顶点彩色图的最小包含热带连接集的枚举。我们提出了一种算法来枚举以下图类的彩色图上的所有最小热带连通集:在时间为O〜*(1.6402〜n)的分割图中,在时间为O〜*(1.8613〜n)的间隔图上, O〜*(3〜(n / 3))中的共分图和框图。我们的算法在每个图类的n个顶点上的图上暗示了最小热带连接集的数量的相应上限。我们还提供了各种新的下界构造,从而为cobipartite和块图获得了匹配的下界。

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