Parallel Genome Sequence Searching on SupercomputerBlueGene/P

机译：在超级计算机上并行基因组序列搜索BlueGene / P

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The aim of this paper is to investigate the efficiency of sequence alignment. The parallel computational model is based on mpiBlast algorithm, data decomposition and manager-worker algorithmic paradigm utilizing massage passing based on MPI and is verified on the basis of flat parallel program implementation on a supercomputer BlueGene/P.

机译：本文的目的是研究序列比对的效率。并行计算模型基于mpiBlast算法，数据分解和经理-工人算法范式，基于MPI进行按摩传递，并基于超级计算机BlueGene / P上的平面并行程序实现进行了验证。

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来源
《Advances in communications, computers, systems, circuits and devices》|2010年|p.27-31|共5页
会议地点 Tenerife(ES);Tenerife(ES);Tenerife(ES);Tenerife(ES);Tenerife(ES);Tenerife(ES);Tenerife(ES);Tenerife(ES)
作者
Plamenka Borovska; Ognian Nakov; Veska Gancheva; Ivailo Georgiev;
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作者单位

Department of Computer Systems in Technical University of Sofia, Bulgaria;

Faculty of Computer Systems and Control in Technical University of Sofia, Bulgaria;

Department of Programming and Computer Technologies in Technical University of Sofia, Bulgaria;

Department of Computer Systems, Technical University of Sofia, Bulgaria;

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原文格式 PDF
正文语种 eng
中图分类计算技术、计算机技术;通信;
关键词
biocomputing; high performance computing; mpiBLAST; parallel performance; searching of sequences;

机译：生物计算高性能计算； mpiBLAST;并行性能；序列搜索;

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专利

1. Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors. [J] . Underwood AP, Mulder A, Gharbia S, Clinical microbiology and infection: European Society of Clinical Microbiology and Infectious Diseases . 2005,第9期

机译：Virulence Searcher：一种工具，用于从细菌基因组中搜索原始基因组序列以寻找推定的毒力因子。
2. Alignment-free Sequence Searching over Whole Genomes Using 3D Random Plot of Query DNA Sequences [J] . Da-Young Lee, Hae-Sung Tak, Han-Ho Kim, Informatica: An International Journal of Computing and Informatics . 2018,第3期

机译：使用查询DNA序列的3D随机图对整个基因组进行无比对序列搜索
3. Searching for common patterns on protein sequences by means of a parallel hybrid honey-bee mating optimization algorithm [J] . Gonzalez-Alvarez David L., Vega-Rodriguez Miguel A., Rubio-Largo Alvaro Parallel Computing . 2018,第AUGa期

机译：通过并行混合蜜蜂交配优化算法搜索蛋白质序列上的共有模式
4. A novel bioinformatics strategy for unveiling hidden characteristics in genome sequences and searching in silico for genetic signal sequences [C] . Takashi Abe, Shigehiko Kanaya, Makoto Kinouchi, 8th World Multi-Conference on Systemics, Cybernetics and Informatics(SCI 2004) vol.7: Applications of Informatics and Cybernetics in Science and Engineering . 2004

机译：一种新颖的生物信息学策略，用于揭示基因组序列中的隐藏特征并在计算机上搜索遗传信号序列
5. A collection of novel algorithms for low memory HMM decoding allowing for parallelization and variable sequences. [D] . Keibler, Evan M. 2007

机译：用于低内存HMM解码的新颖算法的集合，允许并行化和可变序列。
6. Searching for coding sequences in the mammalian genome: the H-2K region of the mouse MHC is replete with genes expressed in embryos. [O] . K Abe, J F Wei, F S Wei, 2020

机译：在哺乳动物基因组中搜索编码序列：小鼠MHC的H-2K区充满了在胚胎中表达的基因。
7. Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors [O] . Underwood A.P., Mulder A., Gharbia S., 2005

机译：毒力搜索器：从细菌基因组中搜索原始基因组序列以寻找推定毒力因子的工具

Parallel Genome Sequence Searching on SupercomputerBlueGene/P

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