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The method selecting highly specific probes for HPV genotype analysis and the probes thereof

机译:用于HPV基因型分析的高特异性探针的选择方法及其探针

摘要

The present invention in advance about from the nucleotide sequence in the defined range specificity to the method and probe for selecting a high probe, even more specifically specific consisting of a nucleic acid for analyzing the genotype of iron Liu Cong virus (Human Papillomavirus, HPV) how to choose a probe and to the probe. In the present invention, in the base sequences within a predetermined range, setting a target nucleotide sequence analysis of the gene group; Setting a range of the probe nucleotide sequence selected from the base sequence group; But selecting the candidate probe within the sequence range, selecting a candidate probe length of 20 to 50 mer of the candidate probe; Comprising, among the candidate probe, the melting temperature between the target nucleic acid and probe for the candidate probe candidates are selected for the candidate probe 50 to 80 ℃; Among the selected probe candidates, from each of the base sequence of the analyte nucleotide sequence group and the other nucleotide sequence other than the nucleotide sequence of the target nucleic acid, select a temperature not more than the probe candidates of the melting temperature with the selected probe candidates, hybridization conditions the step of; And specificity comprising the step of the melting temperature of the secondary structure from the selected probe candidates, select 5 to 10 ℃ lower temperature and higher temperature of the probe candidates than the temperature of the hybridization conditions (specificity) It provides a high probe selection method and the probe. ; Human papilloma virus (HPV), a nucleic acid, the probe nucleotide sequence, the melting temperature
机译:本发明预先从限定范围的核苷酸序列对选择高探针的方法和探针具有特异性,甚至更特别地特异性地由用于分析铁柳丛病毒(人乳头瘤病毒,HPV)基因型的核酸组成如何选择探针以及如何选择探针。在本发明中,在预定范围内的碱基序列中,设定基因组的靶核苷酸序列分析。设置选自碱基序列组的探针核苷酸序列的范围;但是在序列范围内选择候选探针,选择候选探针长度为20至50mer的候选探针;在所述候选探针中,为所述候选探针选择所述靶核酸与所述候选探针候选探针之间的解链温度;在选择的探针候选物中,从分析物核苷酸序列组的碱基序列和靶核酸的核苷酸序列以外的其他核苷酸序列的每一个中,选择不超过解链温度的探针候选的温度。探查候选者,杂交条件的步骤;并且特异性包括从所选探针候选物中二级结构的解链温度的步骤,选择比杂交条件的温度低5至10℃的温度和更高的探针候选温度(特异性)它提供了一种高探针选择方法和探针。 ;人乳头瘤病毒(HPV),核酸,探针核苷酸序列,解链温度

著录项

  • 公开/公告号KR100663992B1

    专利类型

  • 公开/公告日2007-01-02

    原文格式PDF

  • 申请/专利权人 (주)바이오메드랩;

    申请/专利号KR20040052068

  • 发明设计人 황창일;조용구;

    申请日2004-07-05

  • 分类号C12Q1/68;

  • 国家 KR

  • 入库时间 2022-08-21 20:33:17

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