The present invention relates to an SNP primer for identifying Larix olgensis var. koreana, which is specific to a psbC gene, and a method for distinguishing Larix olgensis var. koreana and Larix kaempferi using the SNP primer. More specifically, the SNP primer using the SNP of the psbC gene region of Larix olgensis var. koreana and a primer set by a combination of the primers are PCR analyzed, so that amplified products can be observed in both Larix olgensis var. koreana and Larix kaempferi, and the amplified products specific to Larix olgensis var. koreana can be observed, thereby clearly distinguishing the two species. Therefore, the present invention can be effectively utilized for management of genetic resources, seed management, breeding of hybrids, and management of the distribution of timber of Larix olgensis var. koreana and Larix kaempferi.
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