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首页> 外文期刊>SIAM Journal on Applied Mathematics >DIFFUSED SOLUTE-SOLVENT INTERFACE WITH POISSON-BOLTZMANN ELECTROSTATICS: FREE-ENERGY VARIATION AND SHARP-INTERFACE LIMIT
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DIFFUSED SOLUTE-SOLVENT INTERFACE WITH POISSON-BOLTZMANN ELECTROSTATICS: FREE-ENERGY VARIATION AND SHARP-INTERFACE LIMIT

机译:具有Poisson-Boltzmann静电的溶质-溶剂界面扩散:自由能变化和锋利的界面限制

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摘要

A phase-field free-energy functional for the solvation of charged molecules (e.g., proteins) in aqueous solvent (i.e., water or salted water) is constructed. The functional consists of the solute volumetric and solute-solvent interfacial energies, the solute-solvent van der Waals interaction energy, and the continuum electrostatic free energy described by the Poisson-Boltzmann theory. All these are expressed in terms of phase fields that, for low free-energy conformations, are close to one value in the solute phase and another in the solvent phase. A key property of the model is that the phase-field interpolation of dielectric coefficient has the vanishing derivative at both the solute and the solvent phases. The first variation of such an effective free-energy functional is derived. Matched asymptotic analysis is carried out for the resulting relaxation dynamics of the diffused solute-solvent interface. It is shown that the sharp-interface limit is exactly the variational implicit-solvent model that has successfully captured capillary evaporation in hydrophobic confinement and corresponding multiple equilibrium states of underlying biomolecular systems as found in experiment and molecular dynamics simulations. Our phase-field approach and analysis can be used to possibly couple the description of interfacial fluctuations for efficient numerical computations of biomolecular interactions.
机译:构造用于在水性溶剂(即水或盐水)中溶剂化带电分子(例如蛋白质)的相场自由能。该功能由溶质体积和溶质-溶剂界面能,溶质-溶剂范德华相互作用能以及由Poisson-Boltzmann理论描述的连续统静电自由能组成。所有这些均以相场表示,对于低自由能构象,其在溶质相中接近一个值,在溶剂相中接近另一个值。该模型的关键特性是介电系数的相场插值在溶质和溶剂相都具有消失的导数。推导出了这种有效的自由能功能的第一个变体。对所得的扩散溶质-溶剂界面松弛动力学进行了匹配的渐近分析。结果表明,尖锐的界面极限恰好是变分隐式溶剂模型,该模型成功地捕获了疏水约束条件下的毛细管蒸发以及潜在的生物分子系统的相应多个平衡状态,如实验和分子动力学模拟中所述。我们的相场方法和分析可以用来对界面波动的描述进行耦合,以进行生物分子相互作用的高效数值计算。

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