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首页> 外文期刊>Oncology letters >Celecoxib exhibits an anti-gastric cancer effect by targeting focal adhesion and leukocyte transendothelial migration-associated genes
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Celecoxib exhibits an anti-gastric cancer effect by targeting focal adhesion and leukocyte transendothelial migration-associated genes

机译:塞来昔布通过靶向黏着斑和白细胞跨内皮迁移相关基因而表现出抗胃癌作用

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摘要

Gastric cancer (GC) is a prevalent cancer, which remains incurable, and therefore requires an alternative treatment method. Celecoxib is a nonsteroidal anti-inflammatory drug that targets cyclooxygenase-2, and exhibits anticancer effects. The present study aimed to investigate the anti-GC mechanism of celecoxib using bioinformatics methods. Gene expression datasets GSE56807 (GC tissues and normal gastric tissues) and GSE54657 (celecoxib-treated and non-treated human GC epithelial AGS cells) were downloaded from the Gene Expression Omnibus database. Two groups of differentially expressed genes (DEGs) were identified using limma package in R language. The criterion for GSE56807 was a false discovery rate of <0.05, while that for GSE54657 was P<0.01. Overlapping DEGs from the two datasets were screened out. Subsequently, pathway enrichment analysis was performed using Database for Annotation, Visualization and Integrated Discovery software (P<0.1; gene count 2). In addition, the protein-protein interactions (PPIs) among the overlapped DEGs were obtained based on IntAct, Database of Interacting Proteins, Biomolecular Interaction Network Database and Human Protein Reference Database. Finally, a PPI network was visualized using Cytoscape software. A total of 137 overlapped DEGs were obtained, and DEGs with opposite regulation directions in the two datasets were significantly enriched in focal adhesion and leukocyte transendothelial migration. Subsequently, a PPI network of overlapped DEGs was constructed. Comprehensively, a total of 8 key DEGs [cysteine and glycine rich protein 1 (CSRP1), thrombospondin 1 (THBS1), myosin light chain 9 (MYL9), filamin A (FLNA), actinin alpha 1 (ACTN1), vinculin (VCL), laminin subunit gamma 2 (LAMC2) and claudin 1 (CLDN1)] were upregulated in GC tissues and downregulated in celecoxib-treated cells. In conclusion, celecoxib may exhibit anti-GC effects by suppressing the expression of CSRP1, THBS1, MYL9, FLNA, ACTN1, VCL, LAMC2 and CLDN1, and inhibiting leukocyte transendothelial migration and focal adhesion. However, relevant experiments are required to confirm the conclusion of the present study.
机译:胃癌(GC)是一种普遍存在的癌症,仍然无法治愈,因此需要另一种治疗方法。塞来昔布是靶向环氧化酶2的非甾体类抗炎药,具有抗癌作用。本研究旨在利用生物信息学方法研究塞来昔布的抗GC机制。基因表达数据集GSE56807(GC组织和正常胃组织)和GSE54657(塞来昔布处理和未处理的人GC上皮AGS细胞)已从Gene Expression Omnibus数据库下载。使用R语言的limma软件包识别了两组差异表达基因(DEG)。 GSE56807的标准为错误发现率<0.05,而GSE54657的错误发现率为P <0.01。筛选出两个数据集中的重叠DEG。随后,使用Annotation,Visualization和Integrated Discovery软件数据库进行路径富集分析(P <0.1;基因计数2)。另外,基于IntAct,相互作用蛋白数据库,生物分子相互作用网络数据库和人类蛋白参考数据库获得了重叠DEG之间的蛋白-蛋白相互作用(PPI)。最后,使用Cytoscape软件将PPI网络可视化。总共获得了137个重叠的DEG,并且在两个数据集中具有相反调控方向的DEG在粘着斑粘附和白细胞跨内皮迁移方面显着丰富。随后,构建了重叠DEG的PPI网络。综合而言,共有8个主要的DEG [半胱氨酸和甘氨酸富含蛋白1(CSRP1),血小板反应蛋白1(THBS1),肌球蛋白轻链9(MYL9),纤维蛋白A(FLNA),肌动蛋白α1(ACTN1),纽蛋白(VCL)” ,层粘连蛋白亚基γ2(LAMC2)和claudin 1(CLDN1)]在GC组织中上调,在塞来昔布处理的细胞中下调。总之,塞来昔布可能通过抑制CSRP1,THBS1,MYL9,FLNA,ACTN1,VCL,LAMC2和CLDN1的表达,并抑制白细胞跨内皮迁移和黏着斑而表现出抗GC作用。但是,需要进行相关实验以确认本研究的结论。

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