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首页> 外文期刊>Molecular simulation >Phase-transition properties of glycerol-monopalmitate lipid bilayers investigated by molecular dynamics simulation: Influence of the system size and force-field parameters
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Phase-transition properties of glycerol-monopalmitate lipid bilayers investigated by molecular dynamics simulation: Influence of the system size and force-field parameters

机译:甘油单棕榈酸酯脂质双层的相变特性通过分子动力学模拟研究:系统尺寸和力场参数的影响

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Phase-transition properties of glycerol-1-monopalmitate (GMP) bilayers are investigated using explicit-solvent molecular dynamics (MD) simulations, initiated from structures appropriate for the gel (GL) or liquid crystal (LC) phases, and carried out at different hydration levels and temperatures. Building up on a previous study and based on 600 ns simulations, the influence of the system size and of the force field on the equilibrium thermodynamic and dynamic parameters of the bilayers in the GL and LC phases, as well as on the temperature T~m and properties of the GL ? LC phase transition, are analysed. Qualitatively speaking, the results agree with the available experimental data for the area per lipid in the two phases and for the phase-transition temperatures at the three hydration levels irrespective of the selected model parameters. They also suggest that the total number of hydrogen bonds formed between a lipid headgroup and its environment is essentially constant, amounting to about four in both the LC and the GL phases. Quantitatively speaking, the dependence of T~m on the hydration level is found to be non-systematic across the different combinations of model parameters. This results in part from a sensitivity of the results on the system size and force-field parameters but also from the limited accuracy of the bracketing approach employed here to estimate T_m. Finally, a simple kinetic model is proposed to account for the timescales of the transitions. This model involves enthalpy and entropy increases of about 26 kJ mol~(-1) and 83 J mol~(-1) K~(-1) per lipid, upon going from the GL to the LC phase. The transition state is associated with activation parameters corresponding to 13% and 11%, respectively, of these values along the GL → LC transition, resulting in an activation free energy of about 0.3 kJ mol ~(-1) per lipid at T_m.
机译:使用显式溶剂分子动力学(MD)模拟研究了1-单棕榈酸甘油酯(GMP)双层的相变特性,该模拟是从适合凝胶(GL)或液晶(LC)相的结构开始的,并在不同的温度下进行水化程度和温度。在先前的研究基础上,基于600 ns的模拟,系统尺寸和力场对GL和LC相中双层的平衡热力学和动态参数以及温度T〜m的影响GL的特性? LC相变进行了分析。从质上讲,无论选择哪种模型参数,结果均与两个相中每个脂质的面积以及三个水合水平下的相变温度的可用实验数据相符。他们还表明,脂质头基与其环境之间形成的氢键总数基本恒定,在LC和GL相中总计约为4个。从数量上说,在模型参数的不同组合中,T〜m对水合度的依赖性是非系统的。这部分是由于结果对系统尺寸和力场参数的敏感性,也归因于此处用来估计T_m的包围方法的有限精度。最后,提出了一个简单的动力学模型来说明过渡的时间尺度。该模型涉及从GL到LC相时每个脂质的焓和熵增加约26 kJ mol〜(-1)和83 J mol〜(-1)K〜(-1)。过渡态与沿着GL→LC跃迁分别对应于这些值的13%和11%的活化参数相关,从而导致每个脂质在T_m处约0.3 kJ mol〜(-1)的活化自由能。

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