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Molecular phylogeny of thorny catfishes (Siluriformes: Doradidae)

机译:棘手cat鱼的分子系统发育(Siluriformes:Doradidae)

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摘要

Doradidae is a monophyletic catfish family endemic to continental South America, and composed of 93 valid species here placed in 31 genera. Existing phylogenetic hypotheses for Doradidae are derived from comprehensive analyses of morphological data, and a single molecular-based study on a limited subset of taxa. To provide a robust molecular phylogeny commensurate with those based on morphology, we gathered original and published sequence data for 86 species-level taxa (at least 70 valid species plus 16 new or questionably nominal species) and all genera of Doradidae, as well as 10 species (nine genera) of Auchenipteridae and three species and genera of Aspredinidae as outgroups. 3011 base pairs were aligned for two mitochondrial genes (cytochrome c oxidase subunit 1, and 16S ribosomal RNA) and one nuclear gene (recombination activating gene 1), and analyzed for a total of 143 specimens (130 doradids, 10 auchenipterids and three aspredinids). Tree topologies generated by Maximum Parsimony, Maximum Likelihood, and Bayesian analyses were largely congruent, and are compared to existing phylogenies based on morphology and molecules. Although many of the relationships supported by our molecular analyses corroborated those based on morphology, others are newly hypothesized or remain in conflict. The monotypic Wertheimeria, Franciscodoras and Kalyptodoras, for example, form a newly proposed clade, and the subfamily Astrodoradinae is placed at the base of the doradid tree. The monotypic Doraops and Centrochir, endemic to Caribbean drainages north and west of the Andes, are sister to Pterodoras and Platydoras, respectively, two genera that are widely distributed in Atlantic drainages. Additional biogeographic implications are discussed for hypothesized relationships among doradids. Molecular evidence strongly supports synonymization of monotypic Merodoras with Amblydoras, and transfer of Amblydoras bolivarensis to genus Scorpiodoras. Furthermore, we consider Opsodoras ternetzi to be more properly placed in the genus Nemadoras. The genus Opsodoras may warrant synonymization with Hemidoras, and the monophyly of genus Ossancora is not supported; however, we refrain from taxonomic decisions regarding those taxa until a broader spectrum of doradids can be submitted to further morphological and molecular phylogenetic analyses.
机译:radi科是南美洲大陆特有的单系fish鱼科,由93个有效种组成,位于31个属中。现有的关于radi科的系统发育假说来自对形态学数据的综合分析,以及对有限种类群的单分子研究。为了提供与基于形态学的分子系统发育相称的强大分子系统发育,我们收集了86种物种分类单元(至少70个有效物种加上16个新的或可疑的名义物种)以及全部的十二足目属的原始和已公开序列数据。 Au科(Auchenipteridae)的三个种(九属)和As科(Aspredinidae)的三个属(属)。将3011个碱基对的两个线粒体基因(细胞色素C氧化酶亚基1和16S核糖体RNA)和一个核基因(重组激活基因1)进行比对,共分析143个标本(130个doradid,10个auchenipterids和3个aspredinids)。 。通过最大简约度,最大似然度和贝叶斯分析生成的树形拓扑在很大程度上是一致的,并且可以根据形态和分子与现有系统发育进行比较。尽管我们的分子分析所支持的许多关系证实了基于形态学的关系,但其他关系还是新的假设或仍然存在冲突。例如,单形的Wertheimeria,Franciscodoras和Kalyptodoras形成了新提出的进化枝,亚科Astrodoradinae家族被置于杂种树的底部。在安第斯山脉以北和西部的加勒比海流域特有的单型Doraops和Centrochir,分别是Pterodoras和Platydoras的姐妹,这两个属广泛分布在大西洋流域。讨论了其他生物地理学意义,以推测多拉德之间的关系。分子证据强烈支持单型梅拉多拉斯与伞形纲的同义词,以及将琉璃苣苔转移到蝎形纲属中。此外,我们认为Opsodoras ternetzi更适合放在Nemadoras属中。 Opsodoras属可能需要与Hemidoras同义,并且不支持Ossancora属的单生。但是,我们避免对那些分类群做出分类学决策,直到可以将更广泛的doradis提交给进一步的形态学和分子系统发育分析为止。

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