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SBML and CellML translation in antimony and JSim.

机译:锑和JSim中的SBML和CellML翻译。

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MOTIVATION: The creation and exchange of biologically relevant models is of great interest to many researchers. When multiple standards are in use, models are more readily used and re-used if there exist robust translators between the various accepted formats. SUMMARY: Antimony 2.4 and JSim 2.10 provide translation capabilities from their own formats to SBML and CellML. All provided unique challenges, stemming from differences in each format's inherent design, in addition to differences in functionality. AVAILABILITY AND IMPLEMENTATION: Both programs are available under BSD licenses; Antimony from http://antimony.sourceforge.net/and JSim from http://physiome.org/jsim/. CONTACT: lpsmith@u.washington.edu.
机译:动机:与生物学相关的模型的创建和交换对许多研究人员都非常感兴趣。当使用多种标准时,如果在各种接受的格式之间存在健壮的翻译器,则模型更易于使用和重复使用。简介:Antimony 2.4和JSim 2.10提供了从其自身格式到SBML和CellML的转换功能。除了功能上的差异外,所有格式都带来了独特的挑战,这是由于每种格式固有设计的差异所致。可用性和实现:两种程序都可以在BSD许可下获得;来自http://antimony.sourceforge.net/的锑和来自http://physiome.org/jsim/的JSim。联系人:lpsmith@u.washington.edu。

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