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Beef cattle body temperature during climatic stress: a genome-wide association study

机译:气候压力下的肉牛体温:全基因组关联研究

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摘要

Cattle are reared in diverse environments and collecting phenotypic body temperature (BT) measurements to characterize BT variation across diverse environments is difficult and expensive. To better understand the genetic basis of BT regulation, a genome-wide association study was conducted utilizing crossbred steers and heifers totaling 239 animals of unknown pedigree and breed fraction. During predicted extreme heat and cold stress events, hourly tympanic and vaginal BT devices were placed in steers and heifers, respectively. Individuals were genotyped with the BovineSNP50K_v2 assay and data analyzed using Bayesian models for area under the curve (AUC), a measure of BT over time, using hourly BT observations summed across 5-days (AUC summer 5-day (AUCS5D) and AUC winter 5-day (AUCW5D)). Posterior heritability estimates were moderate to high and were estimated to be 0.68 and 0.21 for AUCS5D and AUCW5D, respectively. Moderately positive correlations between direct genomic values for AUCS5D and AUCW5D (0.40) were found, although a small percentage of the top 5 % 1-Mb windows were in common. Different sets of genes were associated with BT during winter and summer, thus simultaneous selection for animals tolerant to both heat and cold appears possible
机译:牛在不同的环境中饲养,收集表型体温(BT)测量值以表征不同环境中BT的变化既困难又昂贵。为了更好地了解BT调控的遗传基础,利用杂种公牛和小母牛进行了全基因组关联研究,共有239只家谱和品种分数未知的动物。在预计的极端高温和低温胁迫事件期间,每小时将鼓膜和阴道BT设备分别放置在ste牛和小母牛中。使用BovineSNP50K_v2分析对个体进行基因分型,并使用贝叶斯模型分析曲线下面积(AUC),即随时间推移测量BT的数据,使用5天(AUC夏季5天(AUCS5D)和AUC冬季)的每小时BT观测值进行汇总5天(AUCW5D))。后遗传性估计值是中到高的,对于AUCS5D和AUCW5D分别估计为0.68和0.21。在AUCS5D和AUCW5D的直接基因组值之间发现了中等程度的正相关性(0.40),尽管在前5%的1-Mb窗口中只有一小部分是共同的。在冬季和夏季,不同的基因组与BT相关,因此可能同时选择耐高温和耐寒的动物

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