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Selection of reliable reference genes for qPCR studies on chondroprotective action

机译:qPCR研究软骨保护作用的可靠参考基因的选择

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Background: Chondroprotective agents (CPA) such as glucosamine, curcumin and diacerein represent potential remedies for the management of osteoarthritis and several studies have been performed on their effects in-vitro and in-vivo. For the investigation of chondroprotective action on chondrocyte gene expression, quantitative real-time RT-PCR is the method of choice. However, validation of applied normalization strategies represents a crucial and sometimes neglected step in the analysis process. Therefore, the present study aimed to determine the expression stability of common reference genes (ACTB, Beta actin; GAPDH, Glyceraldehyde-3- phosphate; B2M, Beta-2-microglobulin; HPRT1, Hypoxanthine phosphoribosyl-transferase I; SDHA, Succinate dehydrogenase complex, subunit A; YWHAZ, Tyrosine 3-monooxygenase/tryptophan 5- monooxygenase activation protein, zeta polypeptide) under the influence of glucosamine, curcumin and diacerein in the IL-1beta-stimulated C-28/I2 chondrocyte model, using the geNorm software tool. Results: CPA treatment of C-28/I2 chondrocytes significantly affected the expression level of many reference genes (p < 0.05). According to their expression stability, geNorm analysis revealed rankings of the 3 most stable genes (from most stable to least stable) as follows: GAPDH, B2M and SDHA in glucosamine treated samples and HPRT1, GAPDH and B2M in curcumin or diacerein treated samples. Interestingly, ACTB was one of the most variably expressed genes throughout all experiments. Conclusion: Our study points out the problem of relying on commonly used reference genes without an accurate validation process. For normalization purposes in gene profiling studies on glucosamine action, the genes GAPDH, B2M and SDHA are recommended as single reference genes depending on the expression level of the target gene or more favourably in combination. For experiments with curcumin and diacerein the use of HPRT1, GAPDH and B2M should be considered.
机译:背景:软骨保护剂(CPA),例如氨基葡萄糖,姜黄素和双醋瑞因代表了治疗骨关节炎的潜在药物,并且已经对其体外和体内作用进行了一些研究。为了研究对软骨细胞基因表达的软骨保护作用,定量实时RT-PCR是首选方法。但是,应用归一化策略的验证是分析过程中至关重要的步骤,有时甚至是被忽略的步骤。因此,本研究旨在确定常见参考基因(ACTB,β-肌动蛋白; GAPDH,甘油醛-3-磷酸; B2M,β-2-微球蛋白; HPRT1,次黄嘌呤磷酸核糖基转移酶I; SDHA,琥珀酸脱氢酶复合物)的表达稳定性。 ,亚基A; YWHAZ,酪氨酸3-单加氧酶/色氨酸5-单加氧酶激活蛋白,zeta多肽),使用geNorm软件工具在IL-1beta刺激的C-28 / I2软骨细胞模型中,受氨基葡萄糖,姜黄素和双醋瑞因的影响。 。结果:CPA处理C-28 / I2软骨细胞显着影响许多参考基因的表达水平(p <0.05)。根据它们的表达稳定性,geNorm分析显示了3个最稳定的基因(从最稳定到最不稳定)的排名:葡萄糖胺处理的样品中的GAPDH,B2M和SDHA,姜黄素或双醋瑞因处理的样品中的HPRT1,GAPDH和B2M。有趣的是,ACTB是在所有实验中表达最多的基因之一。结论:我们的研究指出了在没有准确验证过程的情况下依赖常用参考基因​​的问题。为了在关于葡萄糖胺作用的基因谱研究​​中的归一化目的,根据靶基因的表达水平或更优选组合起来,建议将基因GAPDH,B2M和SDHA作为单个参考基因。对于姜黄素和双醋瑞因的实验,应考虑使用HPRT1,GAPDH和B2M。

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