首页> 外文期刊>Journal of chemical theory and computation: JCTC >Fragment-Based Approaches for Supramolecular Interaction Energies: Applications to Foldamers and Their Complexes with Anions
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Fragment-Based Approaches for Supramolecular Interaction Energies: Applications to Foldamers and Their Complexes with Anions

机译:基于片段的超分子相互作用能量的方法:对卷曲物的应用及其与阴离子的复合物

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We explore the application of our multilayer Molecules-in-Molecules (MIM) fragment-based method for the study of the energies in supramolecular systems, viz. foldamers and their anion bound complexes. The performance of five different density functional theory (DFT) methods in conjunction with the fragmentation-based method is evaluated against the unfragmented energies for a test set of 5 foldamers (82 to 170 atoms). A systematic protocol has been developed to account for the pi center dot center dot center dot pi interactions in such systems in addition to the traditional fragmentation of the system along the backbone comprised of covalently bonded dimer (or trimer) units. We find a significant improvement in the performance of the method on going from a one-layer MIMI model (errors 10 kcal/mol) to a two-layer MIM2 model (errors 0-2 kcal/mol), due to the incorporation of long-range interactions in the latter approach. Furthermore, we extend the applicability of MIM2 models to determine accurate binding energies of macromolecular receptor-anion complexes. For three different anion bound macrocycles, our MIM2 protocol provides total energies within 1.5 kcal/mol of the unfragmented energies for most of the DFT methods. The corresponding anion binding energies are calculated within 0.5 kcal/mol of the unfragmented binding energies due to systematic error cancellation between the macrocycle and the macrocycle-anion complex. Finally, we have calibrated the absolute accuracy in the calculated binding energies by comparison with unfragmented DLPNO-CCSD(T) calculations on three macromolecule-chloride anion complexes. The most accurate results are obtained using a MIM2 model using DLPNO-CCSD(T) calculations on trimer units as the high level and DFT-D3 (e.g., M06-2X-D3) as the low level of theory, yielding sub kcal/mol errors in the anion binding energies. Our protocol can be an accurate method to calculate anion binding energies for very large supramolecular systems.
机译:我们探讨了我们多层分子 - 分子(MIM)片段的应用方法,用于研究Suprametular Systems的能量,Ziz。比赛者和他们的阴离子结合复合物。与基于碎片的方法结合的五种不同密度泛函理论(DFT)方法的性能进行评估,用于对5个粘合剂(82至170原子)的测试组的未碎片能量进行评估。除了沿着由共价键合二聚体(或三聚体)单元的骨架的传统碎片之外,还开发了系统方案以考虑这些系统中的PI中心点中心点中心点PI相互作用。我们发现从单层MIMI模型(错误& 10 kcal / mol)到两层MIM2模型(0-2 kcal / mol)的方法的性能显着改进,由于该融合后一种方法的远程相互作用。此外,我们扩展了MIM2模型的适用性,以确定大分子受体 - 阴离子复合物的准确性能量。对于三种不同的阴离子绑定的宏键,我们的MIM2协议为大多数DFT方法提供了1.5千卡/摩尔的总能量。由于宏循环和大循环 - 阴离子复合物之间的系统错误消除,相应的阴离子结合能量在0.5kcal / mol的未烧结结合能量内计算。最后,通过与三种大分子 - 氯化物阴离子复合物上的未溶解的DLPNO-CCSD(T)计算进行比较,我们已经校准了计算的结合能中的绝对精度。使用MIM2模型使用MIM2型号使用Trimer单元的MIM2型号获得,作为高级和DFT-D3(例如,M06-2X-D3)作为理论的低水平,产生子kcal / mol阴离子绑定能量中的错误。我们的协议可以是计算非常大的超分子系统的阴离子结合能的准确方法。

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