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首页> 外文期刊>Human mutation >ClinGen advancing genomic data‐sharing standards as a GA4GH driver project
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ClinGen advancing genomic data‐sharing standards as a GA4GH driver project

机译:Clingen推进基因组数据分享标准作为GA4GH驱动程序项目

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摘要

Abstract The Clinical Genome Resource (ClinGen)’s work to develop a knowledge base to support the understanding of genes and variants for use in precision medicine and research depends on robust, broadly applicable, and adaptable technical standards for sharing data and information. To forward this goal, ClinGen has joined with the Global Alliance for Genomics and Health (GA4GH) to support the development of open, freely‐available technical standards and regulatory frameworks for secure and responsible sharing of genomic and health‐related data. In its capacity as one of the 15 inaugural GA4GH “Driver Projects,” ClinGen is providing input on the key standards needs of the global genomics community, and has committed to participate on GA4GH Work Streams to support the development of: (1) a standard model for computer‐readable variant representation; (2) a data model for linking variant data to annotations; (3) a specification to enable sharing of genomic variant knowledge and associated clinical interpretations; and (4) a set of best practices for use of phenotype and disease ontologies. ClinGen's participation as a GA4GH Driver Project will provide a robust environment to test drive emerging genomic knowledge sharing standards and prove their utility among the community, while accelerating the construction of the ClinGen evidence base.
机译:摘要临床基因组资源(Clingen)开发知识库的工作,以支持精密医学和研究中使用的基因和变体的理解,取决于具有共享数据和信息的强大,广泛适用和适应性的技术标准。为了转发这一目标,Clingen已加入全球联盟进行基因组学和健康(GA4GH),以支持开放,可自由的技术标准和监管框架,以获得基因组和健康相关数据的安全和负责分享。作为15个就职GA4GH“驱动程序项目之一的能力,”Clingen正在提供全球基因组学社区的关键标准需求的投入,并致力于参与GA4GH工作流以支持:(1)标准计算机可读变体表示的模型; (2)将变体数据链接到注释的数据模型; (3)一种规范,以实现基因组变异知识和相关的临床解释; (4)使用表型和疾病本体的一系列最佳实践。 Clingen作为GA4GH驱动程序项目的参与将提供强大的环境,以测试驱动出现的基因组知识共享标准并证明其在社区中的效用,同时加速了克明证据基础的建设。

著录项

  • 来源
    《Human mutation 》 |2018年第11期| 共4页
  • 作者单位

    Global Alliance for Genomics and Health HeadquartersOntario Institute for Cancer ResearchToronto;

    Broad Institute of MIT and HarvardCambridge Massachusetts;

    Sunquest Information SystemsBoston Massachusetts;

    Department of Health Sciences Research Center for Individualized MedicineMayo ClinicRochester;

    Broad Institute of MIT and HarvardCambridge Massachusetts;

    Renaissance Computing InstituteUniversity of North CarolinaChapel Hill North Carolina;

    Oregon Clinical &

    Translational Research InstituteOregon Health &

    Science UniversityPortland Oregon;

    Global Alliance for Genomics and Health HeadquartersOntario Institute for Cancer ResearchToronto;

    Oregon Clinical &

    Translational Research InstituteOregon Health &

    Science UniversityPortland Oregon;

    Australian e‐Health Research CentreCSIRO UQ Health Sciences BuildingHerston Qld Australia;

    Department of Molecular and Human GeneticsBaylor College of MedicineHouston Texas;

    Department of Molecular and Human GeneticsBaylor College of MedicineHouston Texas;

    Department of Molecular and Human GeneticsBaylor College of MedicineHouston Texas;

    European Molecular Biology LaboratoryWellcome Genome CampusHinxton Cambridge United Kingdom;

    Broad Institute of MIT and HarvardCambridge Massachusetts;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 医学遗传学 ;
  • 关键词

    data sharing; genomic knowledge; phenotype ontology; standards; variant annotation; variant representation;

    机译:数据共享;基因组知识;表型本体;标准;变异注释;变体表示;

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