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Model reduction of rigid-body molecular dynamics via generalized multipole potentials

机译:广义多极电位模型减少刚体分子动力学

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摘要

Motivated by the challenges of uncertainty quantification for coarse-grained (CG) molecular dynamics, we investigate the role of perturbation theory in model reduction of classical systems. In particular, we consider the task of coarse-graining rigid bodies in the context of generalized multipole potentials that have controllable levels of accuracy relative to their atomistic counterparts. We show how the multipole framework yields a hierarchy of models that systematically connects a CG "point molecule" approximation to the exact dynamics. We use these results to understand when and how the CG models fail to describe atomistic dynamics at the trajectory level and develop asymptotic error estimates for approximate molecular potential energies. Implications for other model-reduction strategies are also discussed. Key findings of this work are that (i) omitting rotational energy introduces significant error when coarse-graining and (ii) attention to symmetry can improve accuracy of "point-molecule" approximations. Analytical derivations and numerical results support these conclusions. Relevance to nonrigid bodies is also discussed.
机译:由于粗粒(CG)分子动力学的不确定性定量挑战,我们研究了扰动理论在古典系统模型减少中的作用。特别地,我们考虑在广义多极电位的背景下具有相对于其原子对应物的可控精度水平的广义多极电位的背景下的粗粒刚体的任务。我们展示了多极框架如何产生模型的层次结构,系统地将CG“点分子”近似为精确的动态。我们使用这些结果来了解CG模型在轨迹级别描述的何时以及如何描述原子动态,并开发用于近似分子势能的渐近误差估计。还讨论了对其他模型减少策略的影响。这项工作的主要发现是(i)省略旋转能量在粗粒和(ii)对对称性的注意力时可以提高“点分子”近似的精度。分析衍生和数值结果支持这些结论。还讨论了与非脂肪机构的相关性。

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