A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles

Louyakis Artemis S.; Gourlé Hadrien; Casaburi Giorgio; Bonjawo Rachelle M. E.; Duscher Alexandrea A.; Foster Jamie S.

摘要

Summary >Microbialites are one of the oldest known ecosystems on Earth and the coordinated metabolisms and activities of these mineral‐depositing communities have had a profound impact on the habitability of the planet. Despite efforts to understand the diversity and metabolic potential of these systems, there has not been a systematic molecular analysis of the transcriptional changes that occur within a living microbialite over time. In this study, we generated metatranscriptomic libraries from actively growing thrombolites, a type of microbialite, throughout diel and seasonal cycles and observed dynamic shifts in the population and metabolic transcriptional activity. The most transcribed genes in all seasons were associated with photosynthesis, but only transcripts associated with photosystem II exhibited diel cycling. Photosystem I transcripts were constitutively expressed at all time points including midnight and sunrise. Transcripts associated with nitrogen fixation, methanogenesis and dissimilatory sulfate reduction exhibited diel cycling, and variability between seasons. Networking analysis of the metatranscriptomes showed correlated expression patterns helping to elucidate how metabolic interactions are coordinated within the thrombolite community. These findings have identified distinctive temporal patterns within the thrombolites and will serve an important foundation to understand the mechanisms by which these communities form and respond to changes in their environment. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span><Abstract XMLNS =“http://www.wiley.com/namespaces/wiley”type =“main”xml：lang =“en”> <title type =“main”>摘要</ title> > microbialite是地球上最古老的已知生态系统之一以及这些矿产沉积社区的协调代谢和活动对该地球的居住性产生了深刻的影响。尽管努力了解这些系统的多样性和代谢潜力，但随着时间的推移，在活性微生物石中发生的转录变化并未有系统的分子分析。在这项研究中，我们从积极种植的血栓栓塞，一种微生物石，整个DIEL和季节性循环中产生的metaTranscriptomic文库，并观察到人群中的动态变化和代谢转录活性。所有季节中最转录的基因与光合作用有关，但只有与光系统II相关的转录物表现出Diel循环。照相我的成绩单在包括午夜和日出等各个时间点的组成思考。与氮固定，甲烷发生和含硫酸化硫酸盐的转录物表现出Diel循环，并且在季节之间变异。 MetaTranscriptomes的网络分析显示相关表达模式有助于阐明代谢相互作用在血栓栓塞群落中的协调。这些发现已经确定了血栓栓塞内的独特时间模式，并将为理解这些社区的机制形成和响应其环境变化的重要基础。</ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" > 著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology 》</a> <b style="margin: 0 2px;">|</b><span>2018年第2期</span><b style="margin: 0 2px;">|</b> <span>共20页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Louyakis Artemis S.&option=202" target="_blank" rel="nofollow">Louyakis Artemis S.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Gourlé Hadrien&option=202" target="_blank" rel="nofollow">Gourlé Hadrien;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Casaburi Giorgio&option=202" target="_blank" rel="nofollow">Casaburi Giorgio;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Bonjawo Rachelle M. E.&option=202" target="_blank" rel="nofollow">Bonjawo Rachelle M. E.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Duscher Alexandrea A.&option=202" target="_blank" rel="nofollow">Duscher Alexandrea A.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Foster Jamie S.&option=202" target="_blank" rel="nofollow">Foster Jamie S.;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> <p>Department of Microbiology and Cell ScienceUniversity of Florida Space Life Sciences LabMerritt Island FL USA;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li> <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span> <a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学 ;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> </p> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023228805.html">A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> </a> <a href="/journal-foreign-22868/" target="_blank" rel="nofollow" class="tuijian_authcolor">Environmental microbiology .</a> <span>2018</span> <span>,第7期</span> </span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译：血栓块寿命的一年：比较MetaTranscriptomics揭示了Diel和季节周期的动态代谢变化</span> </p> </li> <li> <div> <b>2. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023229209.html">A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Louyakis Artemis S.&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Louyakis Artemis S.,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Gourlé Hadrien&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Gourlé Hadrien,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Casaburi Giorgio&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Casaburi Giorgio,</a> <a href="/journal-foreign-22868/" target="_blank" rel="nofollow" class="tuijian_authcolor">Environmental microbiology .</a> <span>2018</span> <span>,第2期</span> </span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译：血栓块寿命的一年：比较MetaTranscriptomics揭示了Diel和季节周期的动态代谢变化</span> </p> </li> <li> <div> <b>3. </b><a class="enjiyixqcontent" href="/academic-journal-foreign_global-and-planetary-change_thesis/0204112296438.html">A 12-year study of the seasonal and interannual dynamics of mesozooplankton in the Laptev Sea: Significance of salinity regime and life cycle patterns</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=E. 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