Characterization of the human DNA gut virome across populations with different subsistence strategies and geographical origin

Rampelli Simone; Turroni Silvia; Schnorr Stephanie L.; Soverini Matteo; Quercia Sara; Barone Monica; Castagnetti Andrea; Biagi Elena; Gallinella Giorgio; Brigidi Patrizia; Candela Marco

摘要

Summary >It is a matter of fact that the human gut microbiome also includes a non‐bacterial fraction represented by eukaryotic cells and viruses. To further explore the gut microbiome variation in human populations, here we characterized the human DNA viral community from publicly available gut metagenome data sets from human populations with different geographical origin and lifestyle. In particular, such data sets encompass microbiome information from two western urban societies (USA and Italy), as well as two traditional hunter‐gatherer communities (the Hadza from Tanzania and Matses from Peru) and one pre‐agricultural tribe (Tunapuco from Peru). Our results allowed for the first taxonomic reconstruction of the complex viral metacommunities within the human gut. The core virome structure included herpesviruses, papillomaviruses, polyomaviruses, adenoviruses and anelloviruses. Using Random Forests and a co‐occurrence analysis approach, we identified the viruses that distinguished populations according to their geographical origin and/or lifestyle. This paves the way for new research aimed at investigating the biological role of the gut virome in human physiology, and the importance of our viral counterpart in the microbiome‐host co‐evolutionary process. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span><Abstract XMLNS =“http://www.wiley.com/namespaces/wiley”type =“main”xml：lang =“en”> <title type =“main”>摘要</ title> >它是事实上，人体肠道微生物组还包括由真核细胞和病毒表示的非细菌部分。为了进一步探讨人群中的肠道微生物组变异，在这里，我们将来自来自人群的人类人群的人类DNA病毒群体从具有不同地理起源和生活方式的人群的特征。特别地，这种数据集包括来自两种西方城市社会（美国和意大利）的微生物组信息，以及两个传统的猎人 - 采集社区（来自坦桑尼亚的Hadza和来自秘鲁的田鼠）和一个农业前部落（来自秘鲁的Tunapuco）。我们的结果允许在人肠内复杂的病毒元交通的第一个分类学重建。核心病毒结构包括疱疹病毒，乳头瘤病毒，多瘤，腺病毒和烧伤症。使用随机森林和共同发生分析方法，我们确定了根据其地理来源和/或生活方式的区分人群的病毒。这为新的研究旨在研究肠道生物在人体生理学中的生物学作用，以及我们的病毒对应于微生物组的共同进化过程中的重要性。</ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" > 著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-22868/'>《Environmental microbiology 》</a> <b style="margin: 0 2px;">|</b><span>2017年第11期</span><b style="margin: 0 2px;">|</b> <span>共8页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Rampelli Simone&option=202" target="_blank" rel="nofollow">Rampelli Simone;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Turroni Silvia&option=202" target="_blank" rel="nofollow">Turroni Silvia;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Schnorr Stephanie L.&option=202" target="_blank" rel="nofollow">Schnorr Stephanie L.;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Soverini Matteo&option=202" target="_blank" rel="nofollow">Soverini Matteo;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Quercia Sara&option=202" target="_blank" rel="nofollow">Quercia Sara;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Barone Monica&option=202" target="_blank" rel="nofollow">Barone Monica;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Castagnetti Andrea&option=202" target="_blank" rel="nofollow">Castagnetti Andrea;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Biagi Elena&option=202" target="_blank" rel="nofollow">Biagi Elena;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Gallinella Giorgio&option=202" target="_blank" rel="nofollow">Gallinella Giorgio;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Brigidi Patrizia&option=202" target="_blank" rel="nofollow">Brigidi Patrizia;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Candela Marco&option=202" target="_blank" rel="nofollow">Candela Marco;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Anthropology Laboratories of Molecular Anthropology and Microbiome ResearchUniversity of OklahomaNorman OK USA;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> <p>Department of Pharmacy and BiotechnologyUniversity of BolognaBologna Italy;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li> <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span> <a href="https://www.zhangqiaokeyan.com/clc/183.html" title="微生物学">微生物学 ;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> </p> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023229187.html">Characterization of the human DNA gut virome across populations with different subsistence strategies and geographical origin</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Rampelli Simone&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Rampelli Simone,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Turroni Silvia&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Turroni Silvia,</a> <a 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