首页> 外文期刊>The Journal of Chemical Physics >CrystaLattE: Automated computation of lattice energies of organic crystals exploiting the many-body expansion to achieve dual-level parallelism
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CrystaLattE: Automated computation of lattice energies of organic crystals exploiting the many-body expansion to achieve dual-level parallelism

机译:ChristSatte:有机晶体的晶格能量的自动化利用许多身体扩张实现双层平行度

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摘要

We present an algorithm to compute the lattice energies of molecular crystals based on the many-body cluster expansion. The required computations on dimers, trimers, etc., within the crystal are independent of each other, leading to a naturally parallel approach. The algorithm exploits the long-range three-dimensional periodic order of crystals to automatically detect and avoid redundant or unnecessary computations. For this purpose, Coulomb-matrix descriptors from machine learning applications are found to be efficient in determining whether two N-mers are identical. The algorithm is implemented as an open-source Python program, CrystaLattE, that uses some of the features of the Quantum Chemistry Common Driver and Databases library. CrystaLattE is initially interfaced with the quantum chemistry package PSI4. With CrystaLattE, we have applied the fast, dispersion-corrected Hartree-Fock method HF-3c to the lattice energy of crystalline benzene. Including all 73 symmetry-unique dimers and 7130 symmetry-unique trimers that can be formed from molecules within a 15 angstrom cutoff from a central reference monomer, HF-3c plus an Axilrod-Teller-Muto estimate of three-body dispersion exhibits an error of only -1.0 kJ mol(-1) vs the estimated 0 K experimental lattice energy of -55.3 +/- 2.2 kJ mol(-1). The convergence of the HF-3c two- and three-body contributions to the lattice energy as a function of intermonomer distance is examined. Published under license by AIP Publishing.
机译:我们提出了一种算法,基于许多群集群扩展来计算分子晶体的晶格能量。晶体内的二聚体,三聚体等的所需计算彼此独立,导致自然平行的方法。该算法利用晶体的远程三维定期顺序自动检测并避免冗余或不必要的计算。为此目的,发现来自机器学习应用的库仑矩阵描述符在确定两个N-MERS是否相同时是有效的。该算法实现为开源Python程序Crystalatte,它使用量子化学公共驱动程序和数据库库的一些功能。 Crystalatte最初与量子化学包装Psi4接口。使用Chrosstamte,我们已经应用了快速的分散校正的Hartree-Fock方法HF-3C,以结晶苯的晶格能量。包括所有73个对称 - 独特的二聚体和7130个对称性 - 独特的三个三聚体,其可以由来自中心参考单体的15埃截止的分子形成,HF-3C加上三体分散的Axilrod-Teller-Muto估计表现出误差仅-1.0 kJ mol(-1)Vs估计0 k实验晶格能量为-55.3 +/- 2.2 kJ mol(-1)。检查了作为晶格能量的HF-3C两和三体贡献作为晶体距离的函数。通过AIP发布在许可证下发布。

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