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首页> 外文期刊>The Journal of Chemical Physics >Direct route to reproducing pair distribution functions with coarse-grained models via transformed atomistic cross correlations
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Direct route to reproducing pair distribution functions with coarse-grained models via transformed atomistic cross correlations

机译:通过转换原子交叉相关性与粗粒模型进行直接途径以再现对分布函数

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摘要

Coarse-grained (CG) models are often parameterized to reproduce one-dimensional structural correlation functions of an atomically detailed model along the degrees of freedom governing each interaction potential. While cross correlations between these degrees of freedom inform the optimal set of interaction parameters, the correlations generated from the higher-resolution simulations are often too complex to act as an accurate proxy for the CG correlations. Instead, the most popular methods determine the interaction parameters iteratively while assuming that individual interactions are uncorrelated. While these iterative methods have been validated for a wide range of systems, they also have disadvantages when parameterizing models for multicomponent systems or when refining previously established models to better reproduce particular structural features. In this work, we propose two distinct approaches for the direct (i.e., noniterative) parameterization of a CG model by adjusting the high-resolution cross correlations of an atomistic model in order to more accurately reflect correlations that will be generated by the resulting CG model. The derived models more accurately describe the low-order structural features of the underlying AA model while necessarily generating inherently distinct cross correlations compared with the atomically detailed reference model. We demonstrate the proposed methods for a one-site-per-molecule representation of liquid water, where pairwise interactions are incapable of reproducing the true tetrahedral solvation structure. We then investigate the precise role that distinct cross-correlation features play in determining the correct pair correlation functions, evaluating the importance of the placement of correlation features as well as the balance between features appearing in different solvation shells. Published under license by AIP Publishing.
机译:粗粒(CG)模型通常参数化以沿着控制每个相互作用电位的自由度来再现原子细节模型的一维结构相关函数。虽然这些自由度之间的交叉相关性通知最佳的交互参数,但从更高分辨率模拟产生的相关性通常太复杂,以充当CG相关性的准确代理。相反,最流行的方法迭代地确定交互参数,同时假设各个交互是不相关的。虽然这些迭代方法已经过广泛的系统验证,但是当多组分系统的模型或精炼先前建立的模型以更好地再现特定结构特征时,它们也具有缺点。在这项工作中,我们通过调整原子模型的高分辨率互相关来提出CG模型的直接(即非特性)参数化的两种不同方法,以便更准确地反映由所得到的CG模型产生的相关性。衍生模型更准确地描述底层AA模型的低阶结构特征,同时与原子详细的参考模型相比必须产生固有的不同的交叉相关。我们证明了液体水的单分子每分子表示的所提出的方法,其中成对相互作用不能再现真正的四面体溶剂化结构。然后,我们研究了不同的互相关特征在确定正确的对相关功能中的精确作用,评估相关特征的放置的重要性以及在不同溶剂化壳中出现的特征之间的平衡。通过AIP发布在许可证下发布。

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