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Accurate schemes for calculation of thermodynamic properties of liquid mixtures from molecular dynamics simulations

机译:从分子动力学模拟计算液体混合物热力学性质的准确方案

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We explore different schemes for improved accuracy of entropy calculations in aqueous liquid mixtures from molecular dynamics (MD) simulations. We build upon the two-phase thermodynamic (2PT) model of Lin et al. [J. Chem. Phys. 119, 11792 (2003)] and explore new ways to obtain the partition between the gas-like and solid-like parts of the density of states, as well as the effect of the chosen ideal "combinatorial" entropy of mixing, both of which have a large impact on the results. We also propose a first-order correction to the issue of kinetic energy transfer between degrees of freedom (DoF). This problem arises when the effective temperatures of translational, rotational, and vibrational DoF are not equal, either due to poor equilibration or reduced system size/time sampling, which are typical problems for ab initio MD. The new scheme enables improved convergence of the results with respect to configurational sampling, by up to one order of magnitude, for short MD runs. To ensure a meaningful assessment, we perform MD simulations of liquid mixtures of water with several other molecules of varying sizes: methanol, acetonitrile, N, N-dimethylformamide, and n-butanol. Our analysis shows that results in excellent agreement with experiment can be obtained with little computational effort for some systems. However, the ability of the 2PT method to succeed in these calculations is strongly influenced by the choice of force field, the fluidicity (hard-sphere) formalism employed to obtain the solid/gas partition, and the assumed combinatorial entropy of mixing. We tested two popular force fields, GAFF and OPLS with SPC/E water. For the mixtures studied, the GAFF force field seems to perform as a slightly better "all-around" force field when compared to OPLS+SPC/E. (C) 2016 Author(s).
机译:我们探索了不同的方案来提高分子动力学(MD)模拟在水性液体混合物中熵计算的准确性。我们基于Lin等人的两相热力学(2PT)模型。 [J.化学物理119,11792(2003)],并探索了获得状态密度的气体部分和固体部分之间分配的新方法,以及所选择的理想“混合”混合熵的效果,两者对结果有很大的影响。我们还建议对自由度之间的动能转移(DoF)问题进行一阶校正。当平移,旋转和振动DoF的有效温度不相等时,由于平衡不佳或系统尺寸/时间采样减少而产生此问题,这是从头开始MD的典型问题。对于短的MD运行,新方案可以使配置采样结果的收敛性提高一个数量级。为确保进行有意义的评估,我们对水与几种大小不同的其他分子的液体混合物进行了MD模拟:甲醇,乙腈,N,N-二甲基甲酰胺和正丁醇。我们的分析表明,对于某些系统,只需很少的计算即可获得与实验极好的一致性的结果。但是,2PT方法在这些计算中取得成功的能力受到力场的选择,用于获得固/气分配的流动性(硬球)形式主义以及假定的混合混合熵的强烈影响。我们用SPC / E水测试了两个流行的力场GAFF和OPLS。对于所研究的混合物,与OPLS + SPC / E相比,GAFF力场似乎表现得略好于“全方位”力场。 (C)2016作者。

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