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Parameter optimization in differential geometry based solvation models

机译:基于微分几何的溶剂化模型中的参数优化

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Differential geometry (DG) based solvation models are a new class of variational implicit solvent approaches that are able to avoid unphysical solvent-solute boundary definitions and associated geometric singularities, and dynamically couple polar and non-polar interactions in a self-consistent framework. Our earlier study indicates that DG based non-polar solvation model outperforms other methods in non-polar solvation energy predictions. However, the DG based full solvation model has not shown its superiority in solvation analysis, due to its difficulty in parametrization, which must ensure the stability of the solution of strongly coupled nonlinear Laplace-Beltrami and Poisson-Boltzmann equations. In this work, we introduce new parameter learning algorithms based on perturbation and convex optimization theories to stabilize the numerical solution and thus achieve an optimal parametrization of the DG based solvation models. An interesting feature of the present DG based solvation model is that it provides accurate solvation free energy predictions for both polar and non-polar molecules in a unified formulation. Extensive numerical experiment demonstrates that the present DG based solvation model delivers some of the most accurate predictions of the solvation free energies for a large number of molecules. (C) 2015 AIP Publishing LLC.
机译:基于微分几何学(DG)的溶剂化模型是一类新的变体隐式溶剂方法,能够避免非物理的溶剂-溶质边界定义和相关的几何奇异性,并在自洽框架中动态耦合极性和非极性相互作用。我们较早的研究表明,基于DG的非极性溶剂化模型在非极性溶剂化能量预测中优于其他方法。但是,基于DG的完全溶剂化模型由于难以进行参数化,因此无法在溶剂化分析中显示出优越性,这必须确保强耦合非线性Laplace-Beltrami和Poisson-Boltzmann方程解的稳定性。在这项工作中,我们引入了基于扰动和凸优化理论的新参数学习算法,以稳定数值解,从而实现基于DG的溶剂化模型的最优参数化。当前基于DG的溶剂化模型的一个有趣特征是,它可以在统一配方中为极性和非极性分子提供准确的溶剂化自由能预测。大量的数值实验表明,当前基于DG的溶剂化模型为大量分子提供了一些最准确的溶剂化自由能预测。 (C)2015 AIP Publishing LLC。

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