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首页> 外文期刊>The Journal of Chemical Physics >The zero-multipole summation method for estimating electrostatic interactions in molecular dynamics: Analysis of the accuracy and application to liquid systems
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The zero-multipole summation method for estimating electrostatic interactions in molecular dynamics: Analysis of the accuracy and application to liquid systems

机译:用于估计分子动力学中静电相互作用的零多极求和方法:准确性分析及其在液体系统中的应用

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摘要

In the preceding paper [I. Fukuda, J. Chem. Phys. 139, 174107 (2013)], the zero-multipole (ZM) summation method was proposed for efficiently evaluating the electrostatic Coulombic interactions of a classical point charge system. The summation takes a simple pairwise form, but prevents the electrically non-neutral multipole states that may artificially be generated by a simple cutoff truncation, which often causes large energetic noises and significant artifacts. The purpose of this paper is to judge the ability of the ZMmethod by investigating the accuracy, parameter dependencies, and stability in applications to liquid systems. To conduct this, first, the energy-functional error was divided into three terms and each term was analyzed by a theoretical error-bound estimation. This estimation gave us a clear basis of the discussions on the numerical investigations. It also gave a new viewpoint between the excess energy error and the damping effect by the damping parameter. Second, with the aid of these analyses, the ZM method was evaluated based on molecular dynamics (MD) simulations of two fundamental liquid systems, a molten sodium-chlorine ion system and a pure water molecule system. In the ion system, the energy accuracy, compared with the Ewald summation, was better for a larger value of multipole moment l currently induced until l ≤ 3 on average. This accuracy improvement with increasing l is due to the enhancement of the excess-energy accuracy. However, this improvement is wholly effective in the total accuracy if the theoretical moment l is smaller than or equal to a system intrinsic moment L. The simulation results thus indicate L ~ 3 in this system, and we observed less accuracy in l = 4. We demonstrated the origins of parameter dependencies appearing in the crossing behavior and the oscillations of the energy error curves. With raising the moment l we observed, smaller values of the damping parameter provided more accurate results and smoother behaviors with respect to cutoff length were obtained. These features can be explained, on the basis of the theoretical error analyses, such that the excess energy accuracy is improved with increasing l and that the total accuracy improvement within l ≤ L is facilitated by a small damping parameter. Although the accuracy was fundamentally similar to the ion system, the bulk water system exhibited distinguishable quantitative behaviors. A smaller damping parameter was effective in all the practical cutoff distance, and this fact can be interpreted by the reduction of the excess subset. A lower moment was advantageous in the energy accuracy, where l = 1 was slightly superior to l = 2 in this system. However, the method with l = 2 (viz., the zero-quadrupole sum) gave accurate results for the radial distribution function. We confirmed the stability in the numerical integration for MD simulations employing the ZM scheme. This result is supported by the sufficient smoothness of the energy function. Along with the smoothness, the pairwise feature and the allowance of the atom-based cutoff mode on the energy formula lead to the exact zero total-force, ensuring the total-momentum conservations for typical MD equations of motion.
机译:在前一篇论文中福田J.物理139,174107(2013)],提出了一种零多极(ZM)求和方法,用于有效评估经典点电荷系统的静电库仑相互作用。该求和采用简单的成对形式,但可以防止可能由于简单的截断而人为产生的电非中性多极状态,该截断通常会引起较大的高能噪声和大量伪像。本文的目的是通过研究在液体系统中应用的准确性,参数依赖性和稳定性来判断ZMmethod的能力。为此,首先,将能量函数误差分为三项,并通过理论误差界限估计来分析每一项。该估计为我们提供了有关数值研究的清晰基础。通过阻尼参数,还给出了多余能量误差与阻尼效果之间的新观点。其次,借助这些分析,基于两个基本液体系统(熔融钠-氯离子系统和纯水分子系统)的分子动力学(MD)模拟,对ZM方法进行了评估。在离子系统中,与目前的Ewald求和相比,能量精度对于当前引起的多极矩l更大的值更好,直到平均l≤3。随着l的增加,这种精度提高是由于过剩能量精度的提高。但是,如果理论力矩l小于或等于系统固有力矩L,则这种改进对总精度完全有效。因此,仿真结果表明该系统中的L〜3,而在l = 4中我们观察到的精度较低。我们证明了参数依存关系的起源出现在交叉行为和能量误差曲线的振荡中。随着观察到的力矩l的增加,阻尼参数的值越小,提供的结果越准确,并且相对于截止长度而言,行为越平滑。这些特征可以在理论误差分析的基础上进行解释,从而使多余的能量精度随l的增加而提高,并且在l≤L范围内的总精度提高通过较小的阻尼参数得以促进。尽管准确度从根本上与离子系统相似,但散装水系统仍表现出明显的定量行为。较小的阻尼参数在所有实际截止距离中都是有效的,这一事实可以通过减少多余的子集来解释。较低的力矩有利于提高能量精度,在该系统中,l = 1略优于l = 2。但是,l = 2(即零四极点和)的方法对于径向分布函数给出了准确的结果。我们确认了采用ZM方案的MD仿真的数值积分的稳定性。能量函数的足够平滑度支持了此结果。除平滑度外,成对特征和能量公式上基于原子的截止模式的余量还导致精确的零总力,从而确保了典型MD运动方程式的总动量守恒。

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