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首页> 外文期刊>The Journal of Chemical Physics >Towards a unified description of the hydrogen bond network of liquid water: A dynamics based approach
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Towards a unified description of the hydrogen bond network of liquid water: A dynamics based approach

机译:对液态水氢键网络的统一描述:基于动力学的方法

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The definition of a hydrogen bond (H-bond) is intimately related to the topological and dynamic properties of the hydrogen bond network within liquid water. The development of a universal H-bond definition for water is an active area of research as it would remove many ambiguities in the network properties that derive from the fixed definition employed to assign whether a water dimer is hydrogen bonded. This work investigates the impact that an electronic-structure based definition, an energetic, and a geometric definition of the H-bond has upon both topological and dynamic network behavior of simulated water. In each definition, the use of a cutoff (either geometric or energetic) to assign the presence of a H-bond leads to the formation of transiently bonded or broken dimers, which have been quantified within the simulation data. The relative concentration of transient species, and their duration, results in two of the three definitions sharing similarities in either topological or dynamic features (H-bond distribution, H-bond lifetime, etc.), however no two definitions exhibit similar behavior for both classes of network properties. In fact, two networks with similar local network topology (as indicated by similar average H-bonds) can have dramatically different global network topology (as indicated by the defect state distributions) and altered H-bond lifetimes. A dynamics based correction scheme is then used to remove artificially transient H-bonds and to repair artificially broken bonds within the network such that the corrected network exhibits the same structural and dynamic properties for two H-bond definitions (the properties of the third definition being significantly improved). The algorithm described represents a significant step forward in the development of a unified hydrogen bond network whose properties are independent of the original hydrogen bond definition that is employed. (C) 2014 AIP Publishing LLC.
机译:氢键(H键)的定义与液态水中氢键网络的拓扑和动态特性密切相关。水的通用氢键定义的发展是一个活跃的研究领域,因为它将消除网络属性中的许多歧义,这些不确定性源自用于分配水二聚体是否氢键的固定定义。这项工作调查了基于电子结构的氢键定义,高能和几何定义对模拟水的拓扑和动态网络行为的影响。在每个定义中,使用截止(几何或能量)来指定H键的存在会导致形成瞬态键或断裂的二聚体,这些二聚体已在模拟数据中进行了量化。瞬态物质的相对浓度及其持续时间会导致三个定义中的两个在拓扑或动态特征(氢键分布,氢键寿命等)方面具有相似性,但是对于这两个定义,没有两个定义显示出相似的行为网络属性的类别。实际上,具有相似本地网络拓扑结构(如相似的平均H键表示)的两个网络可能具有截然不同的全局网络拓扑结构(如缺陷状态分布所示)并更改了H键寿命。然后使用基于动力学的校正方案去除网络中的人为瞬态H键并修复网络中的人为破坏的键,以使校正后的网络对于两个H键定义显示相同的结构和动态特性(第三个定义的特性为明显改善)。所描述的算法代表了统一氢键网络发展的重要一步,该网络的特性与所使用的原始氢键定义无关。 (C)2014 AIP Publishing LLC。

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