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首页> 外文期刊>The Journal of Chemical Physics >Comparative study of hydration shell dynamics around a hyperactive antifreeze protein and around ubiquitin
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Comparative study of hydration shell dynamics around a hyperactive antifreeze protein and around ubiquitin

机译:高活性抗冻蛋白和泛素周围水化壳动力学的比较研究

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The hydration layer surrounding a protein plays an essential role in its biochemical function and consists of a heterogeneous ensemble of water molecules with different local environments and different dynamics. What determines the degree of dynamical heterogeneity within the hydration shell and how this changes with temperature remains unclear. Here, we combine molecular dynamics simulations and analytic modeling to study the hydration shell structure and dynamics of a typical globular protein, ubiquitin, and of the spruce budworm hyperactive antifreeze protein over the 230300 K temperature range. Our results show that the average perturbation induced by both proteins on the reorientation dynamics of water remains moderate and changes weakly with temperature. The dynamical heterogeneity arises mostly from the distribution of protein surface topographies and is little affected by temperature. The ice-binding face of the antifreeze protein induces a short-ranged enhancement of water structure and a greater slowdown of water reorientation dynamics than the non-ice-binding faces whose effect is similar to that of ubiquitin. However, the hydration shell of the ice-binding face remains less tetrahedral than the bulk and is not "ice-like". We finally show that the hydrogen bonds between water and the ice-binding threonine residues are particularly strong due to a steric confinement effect, thereby contributing to the strong binding of the antifreeze protein on ice crystals. (C) 2014 AIP Publishing LLC.
机译:蛋白质周围的水合层在其生化功能中起着至关重要的作用,由具有不同局部环境和不同动力学的水分子异质集合组成。决定水合壳内动态异质程度的因素以及如何随温度变化尚不清楚。在这里,我们结合分子动力学模拟和分析模型,研究了230300 K温度范围内典型球状蛋白,泛素和云杉芽虫超活性抗冻蛋白的水合壳结构和动力学。我们的研究结果表明,两种蛋白质对水的重新定向动力学产生的平均扰动仍然适中,并且随温度的变化微弱。动态异质性主要来自蛋白质表面形貌的分布,几乎不受温度的影响。与非冰结合面(其作用与泛素的作用类似)相比,抗冻蛋白的冰结合面引起水结构的短程增强,并且水重新定向动力学的减慢幅度更大。然而,结冰面的水合壳仍然比本体的四面体少,并且不是“冰状的”。我们最终表明,由于空间限制作用,水和与冰结合的苏氨酸残基之间的氢键特别牢固,从而有助于防冻蛋白在冰晶上的牢固结合。 (C)2014 AIP Publishing LLC。

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