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Suitability of umbrella- and overlap-sampling methods for calculation of solid-phase free energies by molecular simulation

机译:伞状和重叠取样方法通过分子模拟计算固相自由能的适用性

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We examine the ability of two-stage free-energy perturbation methods to yield solid-phase free energies using a system of harmonically coupled particles as a reference. We consider two ways to construct a reference system, one based on derivatives of the intermolecular potential of the target system of interest (the conventional choice in lattice dynamics), and the other based on analysis of pairwise configurational correlations observed in simulations of the target system. For each case, we consider two perturbation techniques that compute the free energy difference between the target and reference systems while avoiding lengthy thermodynamic integration procedures. The methods are overlap sampling as optimized by Bennett, and umbrella sampling optimized in a similar fashion. Such methods require at most two simulations to yield a result, but they can fail if the target and reference do not share a sufficiently large set of relevant configurations. In particular, failure can be expected for large systems, and we examine the question of how large a system can be before this point is reached. Our test case is a face-centered cubic system of r-12 soft spheres, and we find that for systems of up to 108 particles the methods are accurate for all temperatures up to melting; for systems of 256 particles the methods begin to break down at about half the melting temperature. Significantly, we observe that the correction to the harmonic reference is only weakly dependent on system size, suggesting an N -hybrid technique in which perturbation is applied to a small system and the result added to a large-system harmonic reference to obtain a good estimate of the correct large-system free energy. We also examine these approaches, along with thermodynamic integration in temperature, with respect to their computational efficiency. We find that Bennett's method using a derivative-based harmonic reference is the most efficient of all those examined, particularly when employed in the N -hybrid method.
机译:我们使用谐波耦合粒子系统作为参考,研究了两阶段自由能摄动方法产生固相自由能的能力。我们考虑了两种构建参考系统的方法,一种基于目标目标系统的分子间势导数(晶格动力学中的常规选择),另一种基于对目标系统模拟中观察到的成对配置相关性的分析。 。对于每种情况,我们考虑两种摄动技术,这些技术可计算目标系统与参考系统之间的自由能差,同时避免冗长的热力学积分过程。这些方法是Bennett优化的重叠采样,以及以类似方式优化的伞形采样。这样的方法最多需要两次仿真才能得出结果,但是如果目标和参考没有共享足够大的相关配置集,则它们可能会失败。特别是大型系统可能会发生故障,因此我们研究了在达到这一点之前系统可以达到多大的问题。我们的测试案例是一个以r-12软球为中心的面心立方系统,并且发现对于最多108个粒子的系统,该方法在直至熔化的所有温度下都是准确的。对于256个粒子的系统,该方法在熔化温度的一半左右开始分解。重要的是,我们观察到对谐波参考的校正仅微弱地依赖于系统大小,这表明一种N混合技术,其中将扰动应用于小型系统,并将结果添加到大型系统谐波参考中以获得良好的估计。正确的大系统自由能。我们还研究了这些方法以及温度的热力学积分,以及它们的计算效率。我们发现,使用基于导数的谐波基准的Bennett方法在所有检查的方法中效率最高,尤其是在N混合方法中使用时。

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