Strong frequency dependence of dynamical coupling between protein and water

摘要

We use molecular dynamics simulations to study thermal energy flow between a green fluorescent protein and surrounding water to unravel the nature of dynamical coupling between biomolecules and their aqueous environment. We find that low-frequency vibrations in protein, which are thought to be critical for the protein function, are strongly coupled with water, whereas intermediate- and high-frequency vibrations are essentially decoupled with water except for those present at the surface of the protein. Our studies shed a new light on the physical mechanism underlying the dynamical slaving of proteins to water. (c) 2008 American Institute of Physics.