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Quantitative analysis of single-molecule force spectroscopy on folded chromatin fibers

机译:折叠染色质纤维的单分子力光谱定量分析

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Single-molecule techniques allow for picoNewton manipulation and nanometer accuracy measurements of single chromatin fibers. However, the complexity of the data, the heterogeneity of the composition of individual fibers and the relatively large fluctuations in extension of the fibers complicate a structural interpretation of such force-extension curves. Here we introduce a statistical mechanics model that quantitatively describes the extension of individual fibers in response to force on a per nucleosome basis. Four nucleosome conformations can be distinguished when pulling a chromatin fiber apart. A novel, transient conformation is introduced that coexists with single wrapped nucleosomes between 3 and 7 pN. Comparison of force-extension curves between single nucleosomes and chromatin fibers shows that embedding nucleosomes in a fiber stabilizes the nucleosome by 10 k(B)T. Chromatin fibers with 20- and 50-bp linker DNA follow a different unfolding pathway. These results have implications for accessibility of DNA in fully folded and partially unwrapped chromatin fibers and are vital for understanding force unfolding experiments on nucleosome arrays.
机译:单分子技术可实现单染色质纤维的picoNewton操作和纳米精度测量。然而,数据的复杂性,单个纤维的组成的不均匀性以及纤维延伸的相对较大的波动使这种力-延伸曲线的结构解释变得复杂。在这里,我们介绍了一个统计力学模型,该模型定量描述了每个核小体对力的响应对单个纤维的延伸。将染色质纤维拉开时,可以区分出四个核小体构象。引入了一种新颖的瞬时构象,该构象与3至7 pN之间的单个包裹核小体共存。单个核小体和染色质纤维之间的力-延伸曲线比较表明,将核小体包埋在纤维中可使核小体稳定10 k(B)T。具有20和50 bp接头DNA的染色质纤维遵循不同的展开途径。这些结果对完全折叠且部分未包裹的染色质纤维中DNA的可及性具有影响,对于理解核小体阵列上的力展开实验至关重要。

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