首页> 外文期刊>Journal of molecular modeling >Modelling of crystal structure of cis-1,2,3,6 and 3,4,5,6-tetrahydrophthalic anhydrides using lattice energy calculations
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Modelling of crystal structure of cis-1,2,3,6 and 3,4,5,6-tetrahydrophthalic anhydrides using lattice energy calculations

机译:使用晶格能计算模拟顺式1,2,3,6和3,4,5,6-四氢邻苯二甲酸酐的晶体结构

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Lattice energy calculations using a model potential were performed to model the crystal structures of cis-1,2,3,6- and 3,4,5,6-tetrahydrophthalic (THP) anhydrides. The optimized molecular models using the DFT method at the B3LYP/6-31G** level were found consistent with the available experimental evidence and allowed all differences observed in crystal packing between cis-1,2,3,6- and 3,4,5,6-THP anhydrides to be reproduced. Calculations provide evidence for the presence of dipole-dipole C= O center dot center dot center dot C= O intermolecular interactions and support the idea that the molecules distort from their ideal geometries, improving packing in both crystals. The search for minima in the lattice energy of both crystals amongst the more common space groups with Z'= 1, using a simulated annealing crystal structure prediction procedure followed by lattice energy minimization showed that the observed structure of 3,4,5, 6-THP anhydride (Z'= 2) is the thermodynamically most stable, and allowed us to justify why 3,4,5,6-THP anhydride crystallizes in such a complex structure with 16 molecules in the unit cell. The computational model was successful in predicting the second observed form at 173 K for cis-1,2,3, 6-THP anhydride as a polymorph, and could predict several hypothetical structures with Z'= 1 that appear competitive with the observed structures. The results of phonon estimates of zero point intermolecular vibrational energy and entropy suggest that crystal structures of cis-1,2,3,6-THP anhydride cannot be predicted solely on the basis of lattice energy; factors other than thermodynamics favor the observed structures.
机译:使用模型势进行了晶格能量计算,以模拟顺式1,2,3,6,3,4,5,6-四氢邻苯二甲酸(THP)酸酐的晶体结构。发现使用DFT方法在B3LYP / 6-31G **水平上优化的分子模型与可用的实验证据一致,并允许观察到顺式,1,2,3,6-和3,4,可以复制5,6-THP酸酐。计算提供了存在偶极-偶极C = O中心点中心点中心点中心点C = O分子间相互作用的证据,并支持分子偏离理想几何形状,改善两个晶体的堆积的想法。使用模拟退火晶体结构预测程序并随后进行晶格能量最小化,在Z'= 1的更常见空间组中搜索两种晶体的晶格能量最小值,结果表明观察到的3,4,5,6- THP酸酐(Z'= 2)在热力学上是最稳定的,这使我们能够证明为什么3,4,5,6-THP酸酐在如此复杂的结构中以16个分子在晶胞中结晶。该计算模型成功地预测了173 K下的顺式1,2,3,6-THP酸酐为多晶型物的第二种观察形式,并且可以预测Z'= 1的几种假设结构,这些结构看起来与所观察的结构具有竞争性。零点分子间振动能和熵的声子估计结果表明,不能仅基于晶格能预测顺式1,2,3,6-THP酸酐的晶体结构。热力学以外的其他因素也有利于观察到的结构。

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