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首页> 外文期刊>Journal of molecular modeling >Multipole electrostatic potential derived atomic charges in NDDO-methods with spd-basis sets
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Multipole electrostatic potential derived atomic charges in NDDO-methods with spd-basis sets

机译:具有spd基集的NDDO方法中的多极静电势衍生原子电荷

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摘要

The recently introduced multipole approach for computing the molecular electrostatic potential (MEP) within the semiempirical neglect of diatomic differential overlap (NDDO) framework [Horn AHC, Lin Jr-H., Clark T (2005) Theor Chem Acc 114:159-168] has been used to obtain atomic charges of nearly ab initio quality by scaling the semiempirical MEP. The parameterization set comprised a total of 797 compounds and included not only the newly parameterized AM1* elements Al, Si, P, S, Cl, Ti, Zr, and Mo but also the standard AM1 elements H, C, N, O and F. For comparison, the ZDO-approximated MEP was also calculated analytically in the spd-basis. For the AM1*-optimized structures, single-point calculations at the B3LYP, HF and MP2 levels with the 6-31G(d) and LanL2DZP basis sets were performed to obtain the MEP. The regression analysis of all 12 combinations of semiempirical and ab initio MEP data yielded correlation coefficients of at least 0.99 in all cases. Scaling the analytical and multipole-derived semiempirical MEP by the regression coefficients yielded mean unsigned errors below 2.6 and 1.9 kcal mol(-1), respectively. Subsequently, for 22 drug molecules from the World Drug Index, atomic charges were computed according to the RESP procedure using XX/6-31G(d) (XX=B3LYP, HF, MP2) and scaled AM1* multipole MEP; the correlation coefficients obtained are 0.83, 0.85 and 0.83, respectively. Figure: Schematic representation of the atomic charge generation: The molecular electrostatic potential (MEP) is calculated using the AM1* Hamiltonian; then the semiempirical MEP is scaled to DFT or ab initio level, and atomic charges are generated subsequently by the restraint electrostatic potential (RESP) fit method.
机译:最近引入的多极方法,用于计算在双原子差分重叠(NDDO)框架的半经验忽略下的分子静电势(MEP)[Horn AHC,Lin Jr-H。,Clark T(2005)Theor Chem Acc 114:159-168]。已通过缩放半经验MEP来获得从头算质量的原子电荷。参数化设置总共包括797种化合物,不仅包括新参数化的AM1 *元素Al,Si,P,S,Cl,Ti,Zr和Mo,还包括标准AM1元素H,C,N,O和F为了进行比较,还以spd为基础分析计算了ZDO近似的MEP。对于AM1 *优化的结构,使用6-31G(d)和LanL2DZP基集在B3LYP,HF和MP2级别进行单点计算,以获得MEP。在所有情况下,对全部12种半经验和从头算MEP数据组合进行的回归分析得出的相关系数至少为0.99。通过回归系数缩放分析和多极衍生的半经验MEP分别产生低于2.6和1.9 kcal mol(-1)的平均无符号误差。随后,对于来自世界药物索引的22种药物分子,根据RESP程序使用XX / 6-31G(d)(XX = B3LYP,HF,MP2)和按比例缩放的AM1 *多极MEP计算原子电荷;得到的相关系数分别为0.83、0.85和0.83。图:原子电荷产生的示意图:使用AM1 *哈密顿量计算分子静电势(MEP);然后将半经验MEP缩放到DFT或从头算的水平,然后通过约束静电势(RESP)拟合方法生成原子电荷。

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