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Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations

机译:广义集成算法:用于蒙特卡洛和分子动力学模拟的增强采样技术

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摘要

In complex systems with many degrees of freedom such as spin glass and biomolecular systems, conventional simulations in canonical ensemble suffer from the quasi-ergodicity problem. A simulation in generalized ensemble performs a random walk in potential energy space and overcomes this difficulty. From only one simulation run, one can obtain canonical ensemble averages of physical quantities as functions of temperature by the single-histogram and/or multiple-histogram reweighting techniques. In this article we review the generalized ensemble algorithms. Three well-known methods, namely, multicanonical algorithm (MUCA), simulated tempering (ST), and replica-exchange method (REM), are described first. Both Monte Carlo (MC) and molecular dynamics (MD) versions of the algorithms are given. We then present five new generalized-ensemble algorithms which are extensions of the above methods.
机译:在具有许多自由度的复杂系统(例如旋转玻璃和生物分子系统)中,规范集合中的常规模拟会遇到准遍历性问题。广义集成中的模拟在势能空间中执行随机游走并克服了这一困难。仅通过一次模拟运行,就可以通过单直方图和/或多直方图重加权技术获得作为温度的函数的物理量的规范集合平均数。在本文中,我们回顾了广义集成算法。首先描述三种众所周知的方法,即多规范算法(MUCA),模拟回火(ST)和副本交换方法(REM)。给出了算法的蒙特卡罗(MC)和分子动力学(MD)版本。然后,我们提出了五种新的广义集成算法,它们是上述方法的扩展。

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