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Genetic Variation of Abies holophylla Populations in South Korea Based on ISSR Markers

机译:基于ISSR标记的韩国冷杉冷杉种群遗传变异

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摘要

Genetic diversity and genetic differentiation in six natural populations of Abies holophylla Max were investigated using ISSR marker system. From 6 ISSR primers, the average percentage of polymorphic loci was 85.6%, and the average expected heterozygosity (H^) was 0.288. From the result of AMOVA, 94.4% of total genetic variation came fi'om the differences among individuals within populations, and 5.6% was caused by those of among-populations. On the basis of Bayesian inference, genetic differentiation (9" and G^j) and inbreeding coefficient for all populations were 0.045, 0.038, and 0.509, respectively. The correlation between genetic distance and geographical distance was highly significant at the Mental’s test (r=0.74, P<0.05). Six populations divided into two groups according to the results of UPGMA and PCA. One group included Namwon, Cheongdo and Mungyeong population. The other was Inje, Hongcheon and Pyeongchang population. Also, in Bayesian clustering analysis, 6 populations were divided into two clusters. But Cheongdo population was assigned into the other cluster unlike those of UPGMA or PCA. Taking the regions based on the results of the cluster analysis into consideration of AMOVA, 3.9% of genetic variation came from the regional difference. The dendrogram from UPGMA could provide the most genetically reasonable explanation for the distribution of Abies holophylla populations in South Korea.
机译:利用ISSR标记系统,对六个冷杉冷杉的自然种群进行了遗传多样性和遗传分化研究。从6个ISSR引物中,多态性基因座的平均百分数为85.6%,平均预期杂合度(H ^)为0.288。从AMOVA的结果来看,总的遗传变异的94.4%来自人群中个体之间的差异,而5.6%是由人群之间的差异引起的。根据贝叶斯推断,所有种群的遗传分化(9“和G ^ j)和近交系数分别为0.045、0.038和0.509。在心理测试中,遗传距离与地理距离之间的相关性非常显着(r = 0.74,P <0.05)。根据UPGMA和PCA的结果,六个种群分为两组,一组包括Namwon,Cheongdo和Mungyeong种群,另一组是Inje,Hongcheon和Pyeongchang种群,此外,在贝叶斯聚类分析中,将6个种群分为两个聚类,但与UPPGA或PCA不同,将清道种群分配到另一个聚类中,基于聚类分析结果的区域考虑到AMOVA,遗传变异的3.9%来自区域差异UPGMA的树状图可以为韩国冷杉木种群的分布提供最遗传上合理的解释。

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