首页> 外文期刊>Journal of Computational Chemistry: Organic, Inorganic, Physical, Biological >QuickFF: A Program for a Quick and Easy Derivation of Force Fields for Metal-Organic Frameworks from Ab Initio Input
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QuickFF: A Program for a Quick and Easy Derivation of Force Fields for Metal-Organic Frameworks from Ab Initio Input

机译:QuickFF:一种从Ab Initio输入快速轻松推导出金属有机框架力场的程序

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摘要

QuickFF is a software package to derive accurate force fields for isolated and complex molecular systems in a quick and easy manner. Apart from its general applicability, the program has been designed to generate force fields for metal-organic frameworks in an automated fashion. The force field parameters for the covalent interaction are derived from ab initio data. The mathematical expression of the covalent energy is kept simple to ensure robustness and to avoid fitting deficiencies as much as possible. The user needs to produce an equilibrium structure and a Hessian matrix for one or more building units. Afterward, a force field is generated for the system using a three-step method implemented in QuickFF. The first two steps of the methodology are designed to minimize correlations among the force field parameters. In the last step, the parameters are refined by imposing the force field parameters to reproduce the ab initio Hessian matrix in Cartesian coordinate space as accurate as possible. The method is applied on a set of 1000 organic molecules to show the easiness of the software protocol. To illustrate its application to metal-organic frameworks (MOFs), QuickFF is used to determine force fields for MIL-53(Al) and MOF-5. For both materials, accurate force fields were already generated in literature but they requested a lot of manual interventions. QuickFF is a tool that can easily be used by anyone with a basic knowledge of performing ab initio calculations. As a result, accurate force fields are generated with minimal effort. (c) 2015 Wiley Periodicals, Inc.
机译:QuickFF是一个软件包,可以快速,轻松地为分离的复杂分子系统得出准确的力场。除了具有通用性以外,该程序还旨在以自动化方式为金属有机框架生成力场。共价相互作用的力场参数是从头算数据得出的。共价能的数学表达式保持简单,以确保鲁棒性并尽可能避免拟合缺陷。用户需要为一个或多个建筑单元生成平衡结构和Hessian矩阵。之后,使用在QuickFF中实现的三步法为系统生成力场。该方法的前两个步骤旨在最小化力场参数之间的相关性。在最后一步中,通过施加力场参数来精炼参数,以尽可能精确地重现笛卡尔坐标空间中的从头开始的黑森州矩阵。该方法应用于一组1000个有机分子,以显示软件协议的简便性。为了说明其在金属有机框架(MOF)中的应用,QuickFF用于确定MIL-53(Al)和MOF-5的力场。对于这两种材料,文献中已经产生了精确的力场,但是它们需要大量的人工干预。 QuickFF是一种工具,任何具有执行从头算的基础知识的人都可以轻松使用。结果,以最小的努力产生了精确的力场。 (c)2015年威利期刊有限公司

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