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首页> 外文期刊>Journal of Computational Chemistry: Organic, Inorganic, Physical, Biological >The charge-transfer states in a stacked nucleobase dimer complex: A benchmark study
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The charge-transfer states in a stacked nucleobase dimer complex: A benchmark study

机译:堆积的核碱基二聚体复合物中的电荷转移状态:基准研究

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摘要

Electronic singlet excitations of stacked adenine-thymine (AT) and guanine-cytosine (GC) complexes have been investigated with respect to local excitation and charge-transfer (CT) characters. Potential energy curves for rigid displacement of the nucleobases have been computed to establish the distance dependence of the CT states. The second-order algebraic diagrammatic construction [ADC(2)] method served as reference approach for comparison to a selected set of density functionals used within the time-dependent density functional theory (TD-DFT). Particular attention was dedicated to the performance of the recently developed family of M06 functionals. The calculations for the stacked complexes show that at the ADC(2) level, the lowest CT state is S_6 for the AT and as S_4 for the GC pair. At the reference geometry, the actual charge transferred is found to be 0.73 e for AT. In case of GC, this amount is much smaller (0.17 e). With increasing separation of the two nucleobases, the CT state is strongly destabilized. The M06-2X version provides a relatively good reproduction of the ADC(2) results. It avoids the serious overstabilization and overcrowding of the spectrum found with the B3LYP functional. On the other hand, M06-HF destabilizes the CT state too strongly. TD-DFT/M06-2X calculations in solution (heptane, isoquinoline, and water) using the polarizable continuum model show a stabilization of the CT state and an increase in CT character with increasing polarity of the solvent.
机译:关于局部激发和电荷转移(CT)特性,已经研究了堆积的腺嘌呤-胸腺嘧啶(AT)和鸟嘌呤-胞嘧啶(GC)配合物的电子单重态激发。已经计算出核碱基刚性位移的势能曲线,以建立CT状态的距离依赖性。二阶代数图解构造[ADC(2)]方法用作与时间依赖的密度泛函理论(TD-DFT)中使用的一组选定的密度泛函进行比较的参考方法。特别关注的是最近开发的M06功能家族的性能。堆叠复合物的计算表明,在ADC(2)级别,AT的最低CT状态为S_6,GC对的最低CT状态为S_4。在参考几何条件下,对于AT而言,实际转移的电荷为0.73 e。对于GC,该数量要小得多(0.17 e)。随着两个核苷碱基分离的增加,CT状态变得非常不稳定。 M06-2X版本提供了ADC(2)结果的相对较好的再现。它避免了使用B3LYP功能发现的光谱严重过度稳定和拥挤的情况。另一方面,M06-HF会严重破坏CT状态的稳定性。使用可极化连续体模型在溶液(庚烷,异喹啉和水)中进行的TD-DFT / M06-2X计算显示出CT状态的稳定和CT特性随溶剂极性的增加而增加。

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