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Overcoming the Barrier on Time Step Size in Multiscale Molecular Dynamics Simulation of Molecular Liquids

机译:克服分子液体多尺度分子动力学模拟中时间步长的障碍

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摘要

We propose and validate a new multiscale technique, the extrapolative isokinetic Nose—Hoover chain orientational (EINO) motion multiple time step algorithm for rigid interaction site models of molecular liquids. It nontrivially combines the multiple time step decomposition operator method with a specific extrapolation of intermolecular interactions, complemented by an extended isokinetic Nose—Hoover chain approach in the presence of translational and orientational degrees of freedom. The EINO algorithm obviates the limitations on time step size in molecular dynamics simulations. While the best existing multistep algorithms can advance from a 5 fs single step to a maximum 100 fs outer step, we show on the basis of molecular dynamics simulations of the TIP4P water that our EINO technique overcomes this barrier. Specifically, we have achieved giant time steps on the order of 500 fs up to 5 ps, which now become available in the study of equilibrium and conformational properties of molecular liquids without a loss of stability and accuracy.
机译:我们提出并验证了一种新的多尺度技术,即用于分子液体的刚性相互作用位点模型的外推等速鼻-胡佛链定向(EINO)运动多时间步长算法。它平凡地结合了多个时间步分解算子方法和分子间相互作用的特定外推法,并在存在平移和取向自由度的情况下,通过扩展的等速鼻-胡佛链方法进行了补充。 EINO算法消除了分子动力学模拟中时间步长的限制。尽管现有最好的多步算法可以从5 fs的单步前进到最大100 fs的外步,但我们在TIP4P水的分子动力学模拟的基础上证明,我们的EINO技术克服了这一障碍。具体而言,我们已经实现了从500 fs到5 ps的巨大时间步长,现在可以在研究分子液体的平衡和构象特性时使用它,而不会损失稳定性和准确性。

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