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Nonequilibrium Candidate Monte Carlo Simulations with Configurational Freezing Schemes

机译:具有配置冻结方案的非平衡候选蒙特卡罗模拟

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Nonequilibrium Candidate Monte Carlo simulation [Nilmeier et al., Proc. Natl. Acad. Sci. USA. 2011, 108, E1009-E1018] is a tool devised to design Monte Carlo moves with high acceptance probabilities that connect uncorrelated configurations. Such moves are generated through non-equilibrium driven dynamics, producing candidate configurations accepted with a Monte Carlo-like criterion that preserves the equilibrium distribution. The probability of accepting a candidate configuration as the next sample in the Markov chain basically depends on the work performed on the system during the nonequilibrium trajectory and increases with decreasing such a work. It is thus strategically relevant to find ways of producing nonequilibrium moves with low work, namely moves where dissipation is as low as possible. This is the goal of our methodology, in which we combine Nonequilibrium Candidate Monte Carlo with Configurational Freezing schemes developed by Nicolini et al. (J. Chem. Theory Comput. 2011, 7, S82-S93). The idea is to limit the configurational sampling to particles of a well-established region of the simulation sample, namely the region where dissipation occurs, while leaving fixed the other particles. This allows to make the system relaxation faster around the region perturbed by the finite-time switching move and hence to reduce the dissipated work, eventually enhancing the probability of accepting the generated move. Our combined approach enhances significantly configurational sampling, as shown by the case of a bistable dimer immersed in a dense fluid.
机译:非平衡候选蒙特卡罗模拟[Nilmeier et al。,Proc。 Natl。学院科学美国。 2011,108,E1009-E1018]是一种工具,用于设计具有高接受概率的蒙特卡洛动作,这些动作将不相关的配置连接在一起。这种运动是通过非平衡驱动的动力学产生的,产生了保留了平衡分布的类似蒙特卡洛准则的候选构型。接受候选构型作为马尔可夫链中下一个样本的可能性基本上取决于非平衡轨迹期间在系统上执行的功,并且随着此类功的减少而增加。因此,在战略上重要的是找到以低功产生非平衡运动的方法,即耗散尽可能低的运动。这是我们方法论的目标,在该方法中,我们将非平衡候选蒙特卡罗与Nicolini等人开发的构型冻结方案结合在一起。 (J.Chem.Theory Comput.2011,7,S82-S93)。这个想法是将配置采样限制为模拟样本的一个公认区域(即发生耗散的区域)的粒子,而其他粒子则保持固定。这允许使系统在有限时间切换动作所扰动的区域周围更快地松弛,从而减少了耗散的功,最终提高了接受生成的动作的可能性。我们的组合方法大大增强了配置采样,如双稳态二聚体浸入稠密流体中的情况所示。

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