首页> 外文期刊>Journal of chemical theory and computation: JCTC >Accurate Calculation of Hydration Free Energies using Pair-Specific Lennard-Jones Parameters in the CHARMM Drude Polarizable Force Field
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Accurate Calculation of Hydration Free Energies using Pair-Specific Lennard-Jones Parameters in the CHARMM Drude Polarizable Force Field

机译:使用CHARMM Drude极化力场中特定于对的Lennard-Jones参数精确计算无水化能

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摘要

Lennard-Jones (LJ) parameters for a variety of model compounds have previously been optimized within the CHARMM Drude polarizable force field to reproduce accurately pure liquid phase thermodynamic properties as well as additional target data. While the polarizable force field resulting from this optimization procedure has been shown to satisfactorily reproduce a wide range of experimental reference data across numerous series of small molecules, a slight but systematic overestimate of the hydration free energies has also been noted. Here, the reproduction of experimental hydration free energies is greatly improved by the introduction of pair-specific LJ parameters between solute heavy atoms and water oxygen atoms that override the standard LJ parameters obtained from combining rules. The changes are small and a systematic protocol is developed for the optimization of pair-specific LJ parameters and applied to the development of pair-specific LJ parameters for alkanes, alcohols and ethers. The resulting parameters not only yield hydration free energies in good agreement with experimental values, but also provide a framework upon which other pair-specific LJ parameters can be added as new compounds are parametrized within the CHARMM Drude polarizable force field. Detailed analysis of the contributions to the hydration free energies reveals that the dispersion interaction is the main source of the systematic errors in the hydration free energies. This information suggests that the systematic error may result from problems with the LJ combining rules and is combined with analysis of the pair-specific LJ parameters obtained in this work to identify a preliminary improved combining rule.
机译:先前已在CHARMM Drude可极化力场内对各种模型化合物的Lennard-Jones(LJ)参数进行了优化,以精确地再现纯液相热力学性质以及其他目标数据。尽管已证明此优化程序产生的可极化力场可以令人满意地重现许多系列小分子的实验参考数据,但也注意到水合自由能略有但系统地高估了。在这里,通过在溶质重原子和水氧原子之间引入成对特定的LJ参数,大大超过了从结合规则获得的标准LJ参数,大大提高了实验水合自由能的再生。变化很小,并且开发了用于优化对特定的LJ参数的系统协议,并将其用于开发烷烃,醇和醚的特定对LJ参数。所得的参数不仅产生与实验值良好吻合的水合自由能,而且为在CHARMM Drude可极化力场内参数化新化合物时,可在其上添加其他成对特定的LJ参数提供一个框架。对水合自由能贡献的详细分析表明,分散相互作用是水合自由能系统误差的主要来源。该信息表明系统错误可能是由LJ合并规则的问题引起的,并与对这项工作中获得的对特定LJ参数的分析相结合,以识别出初步的改进的合并规则。

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