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首页> 外文期刊>Journal of chemical theory and computation: JCTC >Absorption Spectrum of the Green Fluorescent Protein Chromophore: A Difficult Case for ab Initio Methods?
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Absorption Spectrum of the Green Fluorescent Protein Chromophore: A Difficult Case for ab Initio Methods?

机译:绿色荧光蛋白发色团的吸收光谱:从头算方法的难题?

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摘要

We perform a thorough comparative investigation of the excitation energies of the anionic and neutral forms of the green fluorescent protein (GFP) chromophore in the gas phase using a variety of first-principle theoretical approaches commonly used to access excited state properties of photoactive molecules. These include time-dependent density functional theory (TDDFT), complete-active-space second-order perturbation theory (CASPT2), equation-of-motion coupled cluster (EOM-CC), and quantum Monte Carlo (QMC) methods. We find that all approaches give roughly the same vertical excitation for the anionic form, while TDDFT predicts an excitation for the neutral chromophore significantly lower than the highly correlated methods. Our findings support the picture emerging from the extrapolation of the Kamlet-Taft fit of absorption experimental data in solution and indicate that the protein gives rise to a considerable bathochromic shift with respect to vacuum. These results also open some questions on the interpretation of photodestruction spectroscopy experiments in the gas phase as well as on the accuracy of previous theoretical calculations in the more complex protein environment.
机译:我们使用通常用于访问光敏分子激发态性质的多种第一原理理论方法,对气相中绿色荧光蛋白(GFP)发色团的阴离子和中性形式的激发能进行了全面的比较研究。这些包括时变密度泛函理论(TDDFT),完全活动空间二阶微扰理论(CASPT2),运动方程耦合簇(EOM-CC)和量子蒙特卡洛(QMC)方法。我们发现,所有方法都对阴离子形式给出大致相同的垂直激发,而TDDFT预测中性发色团的激发明显低于高度相关的方法。我们的发现支持从对溶液中吸收实验数据进行Kamlet-Taft拟合的推断得出的图片,并表明该蛋白质相对于真空引起了相当大的红移。这些结果还对气相中的光解光谱实验的解释以及在更复杂的蛋白质环境中先前理论计算的准确性提出了一些问题。

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