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Automatic classification of protein crystallization images using a curve-tracking algorithm

机译:使用曲线跟踪算法对蛋白质结晶图像进行自动分类

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An algorithm for automatic classification of protein crystallization images acquired from a high-throughput vapor-diffusion system is described. The classifier uses edge detection followed by dynamic-programming curve tracking to determine the drop boundary; this technique optimizes a scoring function that incorporates roundness, smoothness and gradient intensity. The classifier focuses on the most promising region in the drop and computes a number of statistical features, including some derived from the Hough transform and from curve tracking. The five classes of images are 'Empty', 'Clear', 'Precipitate', 'Microcrystal Hit' and 'Crystal'. On test data, the classifier gives about 12% false negatives ( true crystals called 'Empty', 'Clear' or 'Precipitate') and about 14% false positives ( true clears or precipitates called 'Crystal' or 'Microcrystal Hit'). [References: 18]
机译:描述了一种从高通量蒸汽扩散系统获取的蛋白质结晶图像自动分类的算法。分类器使用边缘检测,然后动态编程曲线跟踪来确定墨滴边界。该技术优化了结合圆度,平滑度和渐变强度的评分功能。分类器专注于液滴中最有希望的区域,并计算许多统计特征,包括一些从霍夫变换和曲线跟踪中得出的特征。图像的五类为“空”,“清除”,“沉淀”,“微晶命中”和“晶体”。在测试数据上,分类器给出约12%的假阴性(称为“空”,“清除”或“沉淀”的真实晶体)和约14%的假阳性(称为“晶体”或“微晶命中”的纯净或沉淀)。 [参考:18]

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