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To name or not to name: Criteria to promote economy of change in Linnaean classification schemes

机译:命名或不命名:促进Linnaean分类方案变化经济的标准

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The Linnaean classification system provides the universal reference system for communicating about the diversity of life and its hierarchic history. Several limitations that challenge the stability of this system have been identified and, as a result,alternative systems have been proposed since its early inception. The revolution caused by molecular phylogenetics has, more than ever, exemplified that Linnaean classification schemes are subject to a degree of instability that may hamper their significance and communication power. Our analysis of recent changes in the classification of several groups of organisms, with a focus on amphibians and reptiles, reveals two main sources of instability: (i) revisionary, objective (empirical) changes based onthe discovery of unambiguous instances of non-monophyly and on progress in the Globe's species inventory, and (ii) subjective changes based on author preferences or on a poor analysis of the advantages and limitations of new classification schemes. To avoid subjective taxonomic instability, we review and elaborate proposals for the assignment of Linnaean rank to clades, and thereby for the naming of these clades as Linnaean taxa (Taxon Naming Criteria: TNCs). These are drafted from the perspective of practicing taxonomists and can help choosing among alternative monophyly-based classifications under a premise of economy of change. We provide a rationale for each TNC along with real and theoretical examples to illustrate their practical advantages and disadvantages. We conclude that not all TNCs lead to equally informative and stable taxonomies. Therefore, we order the various TNCs by the generality of their implications and provide a workflow scheme to guide the procedure of taxonomic decisions concerning the creation or modification of supraspecific classifications. The following criteria are considered primary when naming taxa: (i) Mono-phyly of the taxon in an inferred species tree; (ii) Clade Stability, i.e., the monophyly of a clade to be namedas taxon should be as strongly supported as possible by various methods of tree inference, tests of clade robustness, and different data sets; and (iii) Phenotypic Diagnosability, i.e., ranked supraspecific taxa should be those that are phenotypically most conspicuous although in phenotypically cryptic groups of organisms it can be warranted to name taxa based on molecular differences alone. We consider various other criteria as secondary (i.e., the Time Banding, Biogeography, Adaptive Zone, and HybridViability TNCs) and refute using them as sole arguments for the modification of established classifications or proposal of new ones. Taxonomists are encouraged to be explicit and consistent when applying TNCs for creating or modifying classifications. Weemphasize that, except for monophyly, the priority TNCs are not proposed as mandatory requisites of a Linnaean taxon but as yardsticks to allow for an informed choice among various clades in a tree that could alternatively be named as Linnaean taxa. Despite a need for plurality, classifications should avoid deliberately violating any of the three primary TNCs because taxa of unstable monophyly or poor diagnosability reduce the information content and hence the utility of the Linnaean system.
机译:Linnaean分类系统提供了通用的参考系统,用于交流生活的多样性及其等级历史。已经确定了一些挑战该系统稳定性的局限性,因此,自其早期诞生以来,就已经提出了替代系统。分子系统学引起的革命比以往任何时候都更能说明,Linnaean分类方案存在一定程度的不稳定,可能会影响其重要性和沟通能力。我们对几类生物的分类的最新变化的分析(重点是两栖动物和爬行动物)揭示了两个主要的不稳定性来源:(i)基于无歧义实例发现的修正,客观(经验)变化以及全球物种清单的进展情况;以及(ii)基于作者的偏爱或对新分类方案的优缺点的不良分析而产生的主观变化。为避免主观分类学上的不稳定性,我们审查并精心拟定了将林奈等级分配给进化枝的建议,并因此将这些进化枝命名为林奈分类群(Taxon命名标准:TNC)。这些是从实践分类学家的角度起草的,可以在变革经济的前提下帮助从基于一字型的替代分类中进行选择。我们为每个跨国公司提供了理论依据,并提供了实际和理论示例,以说明它们的实际优缺点。我们得出的结论是,并非所有跨国公司都能得出同等的信息和稳定的分类法。因此,我们根据其含义的一般性对各种跨国公司进行排序,并提供一种工作流程方案,以指导有关创建或修改超特定分类的生物分类决策程序。命名分类单元时,以下标准被认为是主要标准:(i)推断物种树中分类单元的单性; (ii)进化枝的稳定性,即进化为类的进化枝的单一性,应通过各种树推断方法,进化枝的稳健性测试和不同的数据集得到尽可能强的支持; (iii)表型可诊断性,即排名最高的分类单元应该是表型最明显的分类单元,尽管在表型隐秘的生物体中,可以保证仅根据分子差异来命名分类单元。我们将其他各种标准视为次要标准(例如,时间带,生物地理学,适应区和HybridViability TNC),并驳斥了将其作为修改既有分类或提出新分类的唯一论据。鼓励分类学家在应用TNC创建或修改分类时保持明确和一致。我们强调,除单方面的建议外,不建议将优先级TNC作为Linnaean分类群的强制性要求,而是作为衡量标准,以允许在树中的各个进化枝中进行明智的选择,这些树也可以称为Linnaean分类群。尽管需要复数形式,但分类应避免故意违反三个主要TNC中的任何一个,因为不稳定的单面目或可诊断性差的类群会降低信息含量,从而降低Linnaean系统的实用性。

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