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The detection of Cryptosporidium serpentis in snake fecal samples by real-time PCR

机译:实时荧光定量PCR检测蛇粪样品中蛇形隐孢子虫

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Infection by Cryptosporidium serpentis occurs in reptiles, particularly in snakes. This disease is characterized by chronic infection with the presence of hypertrophic gastritis. The objectives of this study were to use real-time polymerase chain reaction (PCR) targeting the heat shock protein 70 (Hsp70) gene for the detection of C serpentis in fecal samples from snakes and to determine the analytical and epidemiological specificity and sensitivity of this approach relative to the gold standard of nested PCR for the amplification of a fragment of the 18S subunit of the ribosomal RNA (18S rRNA) gene followed by the sequencing of amplified fragments (nPCR/S). Individual fecal samples were collected on a single occasion from 503 asymptomatic adult snakes housed in the serpentarium of the Butantan Institute in Sao Paulo, Brazil. The nested PCR revealed that 60 samples (11.98%) were positive for Cryptosporidium sp. The sequencing of amplified fragments, which was possible for 38 samples, resulted in the identification of Cryptosporidium tyzzeri (7), Cryptosporidium muris (4), Cryptosporidium varanii (12) and C sementis (15) in fecal samples from several snake species. The real-time PCR approach indicated that 17 samples (3.37%) were positive for C. serpentis, whereas the nPCR/S indicated that 15 samples (2.98%) were positive for C. serpentis. The epidemiological sensitivity and specificity of real-time PCR were 93.8% and 99.5%, respectively. Thus, we conclude that real-time PCR targeting the Hsp70 gene is a sensitive and specific method for the detection of C. serpentis in snake fecal samples
机译:蛇形隐孢子虫的感染发生在爬行动物中,特别是在蛇中。该疾病的特征在于存在肥厚性胃炎的慢性感染。这项研究的目的是使用针对热休克蛋白70(Hsp70)基因的实时聚合酶链反应(PCR)检测蛇类粪便样品中的C蛇样,并确定这种蛇毒的分析和流行病学特异性和敏感性。相对于巢式PCR黄金标准的方法,是扩增核糖体RNA(18S rRNA)基因18S亚基的片段,然后对扩增的片段进行测序(nPCR / S)。从巴西圣保罗Butantan研究所的蛇形馆中收容的503条无症状成年蛇中一次采集单个粪便样品。巢式PCR显示60个样品(11.98%)的隐孢子虫属呈阳性。对38个样品进行的扩增片段测序可能导致鉴定了几种蛇类粪便样品中的隐孢子虫(7),粘虫隐孢子虫(4),瓦氏隐孢子虫(12)和硬皮酵母(15)。实时荧光定量PCR方法显示17个样品(3.37%)为蛇形弯曲杆菌阳性,而nPCR / S显示15个样品(2.98%)为蛇形弯曲杆菌阳性。实时荧光定量PCR的流行病学敏感性和特异性分别为93.8%和99.5%。因此,我们得出结论,针对Hsp70基因的实时PCR是检测蛇粪样品中蛇纹梭菌的灵敏且特异的方法

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