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The search for local native-like nucleation centers in the unfolded state of β-sheet proteins

机译:寻找处于未折叠状态的β-折叠蛋白的本地天然样成核中心

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摘要

An approach involving the systematic computational conforma- tional analysis of all overlapping hexapeptide segments in the protein sequence has found fragments with the higher than average propensity to adopt the native-like three-dimensional structure and other regular nonrandom structures in the unfolded states of four β-sheet proteins, namely IFABP (intestinal fatty acid-binding protein), ILBP (ileal fatty acid-binding protein), CRABP I (cellular retinoic acid-binding protein), and CRBP II (cellular retinal binding protein). The native three-dimensional structures of these four proteins are very similar even though they possess as little as ≈30/100 sequence similarity.
机译:一种对蛋白质序列中所有重叠六肽段进行系统计算构象分析的方法,发现具有高于平均倾向的片段在四个β的未折叠状态下采用天然的三维结构和其他规则的非随机结构-表层蛋白,即IFABP(肠脂肪酸结合蛋白),ILBP(回肠脂肪酸结合蛋白),CRABP I(细胞视黄酸结合蛋白)和CRBP II(细胞视网膜结合蛋白)。这四个蛋白质的天然三维结构非常相似,即使它们具有低至≈30/ 100的序列相似性。

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