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The genome of Eucalyptus grandis

机译:桉树的基因组

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摘要

Eucalypts are the world's most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest proportion thus far in plant genomes. Eucalyptus also shows the highest diversity of genes for specialized metabolites such as terpenes that act as chemical defence and provide unique pharmaceutical oils. Genome sequencing of the E. grandis sister species E. globulus and a set of inbred E. grandis tree genomes reveals dynamic genome evolution and hotspots of inbreeding depression. The E. grandis genome is the first reference for the eudicot order Myrtales and is placed here sister to the eurosids. This resource expands our understanding of the unique biology of large woody perennials and provides a powerful tool to accelerate comparative biology, breeding and biotechnology.
机译:桉树是世界上种植最广泛的硬木树。它们出色的多样性,适应性和增长使它们成为纤维和能源的全球可再生资源。我们对桉树640兆碱基的基因组进行了大于94%的测序和组装。在36,376个预测的蛋白质编码基因中,有34%发生串联重复,这是迄今为止植物基因组中最大的比例。桉树还显示出专门代谢产物(如萜烯)的基因多样性最高,萜烯起着化学防御作用并提供独特的药用油。大肠埃希菌姐妹种E. globulus和一组自交大肠埃希斯树基因组的基因组测序揭示了动态的基因组进化和近交抑郁症的热点。大肠埃希氏菌(E. grandis)基因组是欧洲双子叶植物订单Myrtales的第一个参考,并被放置在这里,成为欧洲长尾蛇的姐妹。该资源扩大了我们对大型木质多年生植物独特生物学的理解,并为加速比较生物学,育种和生物技术提供了强大的工具。

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  • 来源
    《Nature》 |2014年第7505期|356-362|共7页
  • 作者单位

    Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa,Genomics Research Institute (GRI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa;

    Laboratorio de Genetica Vegetal, EMBRAPA Recursos Geneticos e Biotecnologia, EPQB Final W5 Norte, 70770-917 Brasilia, Brazil,Programa de Ciencias Genomicas e Biotecnologia - Universidade Catolica de Brasilia SGAN 916, 70790-160 Brasilia, Brazil;

    US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA,Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA;

    US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA;

    US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, California 94598, USA;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
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  • 正文语种 eng
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