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Gene discovery in the tropical scallop Nodipecten nodosus: Construction and sequencing of a normalized cDNA library

机译:热带扇贝Nodipecten nodosus中的基因发现:标准化的cDNA文库的构建和测序

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摘要

We report the construction and characterization of a normalized cDNA library from the digestive gland of the marine bivalve Nodipecten nodosus, a commercially valuable tropical scallop. A total of 288 clones were sequenced, and 250 unique sequences were obtained. The cDNA library showed a small sequence redundancy (2.3%) and high numbers of recombinant (99.9%) and independent clones (2.0 × 10~6 cfu), indicating that the cDNA library generated in this study is a profitable resource for efficient gene discovery for N. nodosus. EST functional annotation by Gene Ontology term assignment revealed the identification of sequences potentially involved in aquaculture and ecotoxicology relevant processes such as apoptosis, growth, lipid metabolism, reproduction, development, response to stress and immunity.
机译:我们报告从海洋双壳类Nodipecten nodosus,商业上有价值的热带扇贝的消化腺标准化的cDNA文库的构建和表征。总共对288个克隆进行了测序,并获得了250个独特序列。 cDNA文库显示出小的序列冗余度(2.3%)和大量重组子(99.9%)和独立克隆(2.0×10〜6 cfu),表明该研究产生的cDNA文库是有效基因发现的有利资源。为诺多猪笼草。通过基因本体术语分配的EST功能注释揭示了与水产养殖和生态毒理学相关过程(例如细胞凋亡,生长,脂质代谢,繁殖,发育,对压力和免疫的反应)相关的潜在序列的鉴定。

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  • 来源
    《Marine Environmental Research》 |2013年第10期|34-40|共7页
  • 作者单位

    Instituto de Biofisica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho 373, CSS, Bl. G. 21949902 Rio de Janeiro, Brazil;

    Department of Science and Technological Innovation, Universita del Piemonte Orientale Amedeo Avogadro. 15121 Alessandria, Italy;

    Laboratorio de Hanseniase, Instituto Oswaldo Cruz, Fundacao Oswaldo Cruz (FIOCRUZ), Av. Brasil, 4365, Manguinhos, 21045900 Rio de Janeiro, RJ, Brazil;

    Instituto de Biofisica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho 373, CSS, Bl. G. 21949902 Rio de Janeiro, Brazil;

    Instituto de Biofisica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Av. Carlos Chagas Filho 373, CSS, Bl. G. 21949902 Rio de Janeiro, Brazil;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    EST; mRNA; Lion's Paw scallop; Aquaculture; Stress;

    机译:美东时间;mRNA;狮子的爪子扇贝;水产养殖;强调;

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