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Site-Specific Coupling of Hydration Water and Protein Flexibility Studied in Solution with Ultrafast 2D-IR Spectroscopy

机译:超快速2D-IR光谱研究溶液中水合水和蛋白质灵活性的特定位置耦合

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摘要

There is considerable evidence for the slaving of biomolecular dynamics to the motions of the surrounding solvent environment, but to date there have been few direct experimental measurements capable of site-selectively probing both the dynamics of the water and the protein with ultrafast time resolution. Here, two-dimensional infrared spectroscopy (2D-IR) is used to study the ultrafast hydration and protein dynamics sensed by a metal carbonyl vibrational probe covalently attached to the surface of hen egg white lysozyme dissolved in D_2O/glycerol solutions. Surface labeling provides direct access to the dynamics at the protein-water interface, where both the hydration and the protein dynamics can be observed simultaneously through the vibrational probe's frequency-frequency correlation function. In pure D_2O, the correlation function shows a fast initial 3 ps decay corresponding to fluctuations of the hydration water, followed by a significant static offset attributed to fluctuations of the protein that are not sampled within the <20 ps experimental window. Adding glycerol increases the bulk solvent viscosity while leaving the protein structurally intact and hydrated. The hydration dynamics exhibit a greater than 3-fold slowdown between 0 and 80% glycerol (v/v), and the contribution from the protein's dynamics is found to slow in a nearly identical fashion. In addition, the magnitude of the dynamic slowdown associated with hydrophobic hydration is directly measured and shows quantitative agreement with predictions from molecular dynamics simulations.
机译:有大量证据表明生物分子动力学可随周围溶剂环境的运动而变化,但迄今为止,几乎没有直接的实验测量能够以超快的时间分辨率来选择性地探测水和蛋白质的动力学。在这里,二维红外光谱(2D-IR)用于研究共价连接到溶解在D_2O /甘油溶液中的蛋清溶菌酶表面的羰基金属振动探针感测到的超快水合和蛋白质动力学。表面标记可直接访问蛋白质-水界面的动力学,通过振动探针的频率-频率相关函数可以同时观察水化和蛋白质动力学。在纯D_2O中,相关函数显示出一个快速的3 ps初始快速衰减,该衰减对应于水合水的波动,随后是归因于蛋白质波动的显着静态偏移,而该波动未在<20 ps实验窗口内进行采样。添加甘油可增加整体溶剂粘度,同时使蛋白质在结构上完整并水合。在0%至80%的甘油(v / v)之间,水合动力学表现出大于3倍的减慢,并且发现蛋白质动力学的贡献几乎以相同的方式减慢。此外,直接测量与疏水水合有关的动态减慢的幅度,并显示出与分子动力学模拟的预测定量一致。

著录项

  • 来源
    《Journal of the American Chemical Society》 |2012年第45期|18705-18712|共8页
  • 作者单位

    Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan 48109, United States;

    Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan 48109, United States;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
  • 原文格式 PDF
  • 正文语种 eng
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