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Antifreeze Glycoproteins Bind Reversibly to Ice via Hydrophobic Groups

机译:抗冻糖蛋白通过疏水基团可逆地结合在冰上

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摘要

Antifreeze molecules allow organisms to survive in subzero environments. Antifreeze glycoproteins (AFGPs), produced by polar fish, are the most potent inhibitors of ice recrystallization. To date, the molecular mechanism by which AFGPs bind to ice has not yet been elucidated. Mutation experiments cannot resolve whether the binding occurs through the peptide, the saccharides, or both. Here, we use molecular simulations to determine the mechanism and driving forces for binding of AFGP8 to ice, its selectivity for the primary prismatic plane, and the molecular origin of its exceptional ice recrystallization activity. Consistent with experiments, AFGP8 in simulations preferentially adopts the PPII helix secondary structure in solution. We show that the segregation of hydrophilic and hydrophobic groups in the PPII helix is vital for ice binding. Binding occurs through adsorption of methyl groups of the peptide and disaccharides to ice, driven by the entropy of dehydration of the hydrophobic groups as they nest in the cavities at the ice surface. The selectivity to the primary prismatic plane originates in the deeper cavities it has compared to the basal plane. We estimate the free energy of binding of AFGP8 and the longer AFGPs4–6, and find them to be consistent with the reversible binding demonstrated in experiments. The simulations reveal that AFGP8 binds to ice through a myriad of conformations that it uses to diffuse through the ice surface and find ice steps, to which it strongly adsorbs. We interpret that the existence of multiple, weak binding sites is the key for the exceptional ice recrystallization inhibition activity of AFGPs.
机译:防冻剂分子可使生物在零度以下的环境中生存。极地鱼类产生的抗冻糖蛋白(AFGP)是最有效的冰重结晶抑制剂。迄今为止,AFGP与冰结合的分子机制尚未阐明。突变实验无法确定结合是通过肽,糖还是通过两者发生。在这里,我们使用分子模拟来确定AFGP8与冰结合的机理和驱动力,其对主棱柱面的选择性以及其出色的冰重结晶活性的分子起源。与实验一致,模拟中的AFGP8在溶液中优先采用PPII螺旋​​二级结构。我们表明,PPII螺旋​​中亲水基团和疏水基团的分离对于冰的结合至关重要。结合是通过肽和二糖的甲基吸附到冰上而发生的,这是由于疏水基团嵌套在冰表面的空腔中而受到的脱水熵的作用。对主棱柱面的选择性源自与基面相比更深的腔。我们估计了AFGP8和更长的AFGPs4-6结合的自由能,发现它们与实验中证明的可逆结合一致。模拟显示,AFGP8通过无数构象与冰结合,用于扩散通过冰面并找到冰阶,使其强烈吸附。我们认为存在多个弱结合位点是AFGPs异常冰重结晶抑制活性的关键。

著录项

  • 来源
    《Journal of the American Chemical Society》 |2018年第14期|4803-4811|共9页
  • 作者单位

    Department of Chemistry, The University of Utah, Salt Lake City, Utah 84112-0580, United States,Institute for Fiber Engineering, Shinshu University, Ueda, Nagano 386-8567, Japan;

    Department of Chemistry, The University of Utah, Salt Lake City, Utah 84112-0580, United States;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
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  • 入库时间 2022-08-18 03:07:19

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